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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA928559" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA928559 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
902336 902336 PRJNA928559_P_NODE_130021_length_311_cov_2.626050_g128452_i0 PRJNA928559 130021 311 2.62605 8.1670155 Catenaria sp. 2420186 Fungi Fungi 545 1.0899999999999999e-150   NTclustered gi|1866582716|gb|MT730891.1| 2420186 g128452 i0 98.397 82.7266881028939 312 2 100 3 1 311 2938 3247 Catenaria sp. isolate JEL0913 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25728 545 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria sp.
5081500 5081500 PRJNA928559_P_NODE_70004_length_420_cov_3.348703_g68435_i0 PRJNA928559 70004 420 3.348703 14.0645526 Physoderma 109874 Fungi Fungi 161 6.44e-35   NTclustered gi|311235628|ref|NG_027645.1| 276838 g68435 i0 94.286 36.9119047619048 105 6 25 0 316 420 1720 1616 Physoderma maydis DUKE DUH0007932 28S rRNA gene, partial sequence; from reference material blastn 15503 161 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Physoderma Physoderma maydis
6007585 6007585 PRJNA928559_P_NODE_70325_length_419_cov_4.416185_g68756_i0 PRJNA928559 70325 419 4.416185 18.50381515 Blastocladiella sp. 2169676 Fungi Fungi 418 3.449999999999999e-112   NTclustered gi|1866582625|gb|MT730800.1| 2169676 g68756 i0 84.706 65.6133651551313 425 57 100 8 1 419 4658 4236 Blastocladiella sp. isolate JEL0735 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 27492 418 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella sp.
8905656 8905656 PRJNA928559_P_NODE_176347_length_262_cov_1.867725_g174778_i0 PRJNA928559 176347 262 1.867725 4.8934395 Catenariaceae 109872 Fungi Fungi 372 1.62e-98   NTclustered gi|82398236|gb|DQ273780.1| 945688 g174778 i0 93.902 16.8549618320611 246 15 94 0 1 246 1728 1973 Catenophlyctis sp. JEL298 isolate AFTOL-ID 36 28S ribosomal RNA gene, partial sequence blastn 4416 372 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenophlyctis Catenophlyctis variabilis
18755262 18755262 PRJNA928559_P_NODE_225235_length_217_cov_13.701389_g223666_i0 PRJNA928559 225235 217 13.701389 29.73201413 Physoderma maydis 276838 Fungi Fungi 111 3.12e-20   NTclustered gi|626438334|ref|NR_119547.1| 276838 g223666 i0 86.408 45.668202764977 103 13 47 1 61 163 296 195 Physoderma maydis DUKE DUH0007932 ITS region; from reference material blastn 9910 111 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Physoderma Physoderma maydis
20029745 20029745 PRJNA928559_P_NODE_189156_length_252_cov_2.374302_g187587_i0 PRJNA928559 189156 252 2.374302 5.98324104 Blastocladiella emersonii 4808 Fungi Fungi 255 1.62e-63   NTclustered gi|2440036|emb|X90411.1| 4808 g187587 i0 93.605 67.6349206349206 172 9 68 2 1 172 3207 3376 B.emersonii DNA for 28S ribosomal RNA gene blastn 17044 255 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
25479666 25479666 PRJNA928559_P_NODE_45800_length_501_cov_5.413551_g44238_i0 PRJNA928559 45800 501 5.413551 27.12189051 Catenariaceae 109872 Fungi Fungi 913 0   NTclustered gi|1866582779|gb|MT730954.1| 2420186 g44238 i0 99.799 102.281437125748 498 0 99 1 1 498 4078 4574 Catenaria sp. isolate PL171 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 51243 913 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;