RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA928559" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 4 ✖

bioproject 1

  • PRJNA928559 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9832521 9832521 PRJNA928559_P_NODE_97768_length_360_cov_4.738676_g96199_i0 PRJNA928559 97768 360 4.738676 17.0592336 Dicrateria rotunda 2703868 Haptophyta other_Eukaryota 228 5.279999999999998e-55   NTclustered gi|259419544|emb|FN392559.1| 2703868 g96199 i0 81.169 81.0555555555556 308 37 86 11 4 311 121 407 Imantonia rotunda partial mRNA for ADP-ribosylation factor 3, contig 10068 blastn 29180 228 1 Eukaryota Haptista   Haptophyta   Isochrysidales Isochrysidaceae Dicrateria Dicrateria rotunda
11106376 11106376 PRJNA928559_P_NODE_166169_length_271_cov_3.444444_g164600_i0 PRJNA928559 166169 271 3.444444 9.33444324 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 158 5.12e-34   NTclustered gi|551583414|ref|XM_005777087.1| 280463 g164600 i0 79.31 13.5608856088561 232 42 85 5 2 230 3816 4044 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 3675 158 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
20029204 20029204 PRJNA928559_P_NODE_15176_length_801_cov_49.837912_g13817_i0 PRJNA928559 15176 801 49.837912 399.20167512 Pterocystis tropica 299886 Root_unresolved Root_unresolved 625 3.7799999999999996e-174   NTclustered gi|61187375|gb|AY752993.1| 299886 g13817 i0 91.023 53.9388264669164 479 20 59 13 266 739 2501 2041 Pterocystis tropica 28S ribosomal RNA gene, partial sequence blastn 43205 625 1 Eukaryota Haptista     Centroplasthelida Pterocystida Pterocystidae Pterocystis Pterocystis tropica
22579572 22579572 PRJNA928559_P_NODE_136738_length_303_cov_1.400000_g135169_i0 PRJNA928559 136738 303 1.4 4.242 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 156 2.09e-33   NTclustered gi|551555706|ref|XM_005764956.1| 280463 g135169 i0 78.926 3.03300330033003 242 41 78 9 42 278 737 501 Emiliania huxleyi CCMP1516 mitochondrial carrier protein mRNA blastn 919 156 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;