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contig_metadata

24 rows where analysis = "blastn", bioproject = "PRJNA927284" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA927284 · 24 ✖

analysis 1

  • blastn · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
901899 901899 PRJNA927284_P_NODE_8241_length_169_cov_3.092857_g8034_i0 PRJNA927284 8241 169 3.092857 5.22692833 Antirrhinum majus 4151 Plants Plants 313 5.859999999999999e-81   NTclustered gi|41323870|gb|AY423077.1| 4151 g8034 i0 100 100 169 0 100 0 1 169 954 1122 Antirrhinum majus isolate DNA-CW4 26S ribosomal RNA gene, partial sequence blastn 16900 313 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Plantaginaceae Antirrhinum Antirrhinum majus
6005017 6005017 PRJNA927284_P_NODE_2305_length_456_cov_3.646370_g2113_i0 PRJNA927284 2305 456 3.64637 16.6274472 Taxillus matsudae 2805424 Plants Plants 126 2.5699999999999997e-24   NTclustered gi|1970150767|gb|MW555625.1| 2805424 g2113 i0 84.375 4.65350877192982 128 20 28 0 258 385 3022 2895 Taxillus matsudae voucher Su138 large subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 2122 126 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Santalales Loranthaceae Taxillus Taxillus matsudae
8554688 8554688 PRJNA927284_P_NODE_2047_length_492_cov_4.302376_g1753_i1 PRJNA927284 2047 492 4.302376 21.16768992 Smilax moranensis 1080332 Plants Plants 52.8 0.048   NTclustered gi|2231659460|gb|OL693684.1| 1080332 g1753 i1 100 0.0569105691056911 28 0 6 0 449 476 47757 47730 Smilax moranensis chloroplast, complete genome blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Liliales Smilacaceae Smilax Smilax moranensis
8905359 8905359 PRJNA927284_P_NODE_4407_length_286_cov_4.766537_g4200_i0 PRJNA927284 4407 286 4.766537 13.63229582 Magnoliopsida 3398 Plants Plants 523 4.659999999999998e-144   NTclustered gi|6467913|gb|AF197583.1| 108423 g4200 i0 99.65 100 286 1 100 0 1 286 386 101 Sarcococca confusa 18S ribosomal RNA gene, partial sequence blastn 28600 523 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Buxales Buxaceae Sarcococca Sarcococca confusa
10181228 10181228 PRJNA927284_P_NODE_4868_length_264_cov_2.221277_g4661_i0 PRJNA927284 4868 264 2.221277 5.86417128 Magnoliopsida 3398 Plants Plants 158 4.97e-34   NTclustered gi|2123588875|ref|XR_006435870.1| 4565 g4661 i0 86.713 48.5643939393939 143 17 54 2 66 208 422 282 PREDICTED: Triticum aestivum 28S ribosomal RNA (LOC123074126), rRNA blastn 12821 158 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
10181237 10181237 PRJNA927284_P_NODE_7988_length_174_cov_2.620690_g7781_i0 PRJNA927284 7988 174 2.62069 4.5600006 Interfilum 519230 Plants Plants 322 1.01e-83   NTclustered gi|2550522787|gb|OR168093.1| 519232 g7781 i0 100 149.402298850575 174 0 100 0 1 174 93765 93938 Interfilum sp. SAG 36.88 plastid, complete genome blastn 25996 322 1 Eukaryota   Viridiplantae Streptophyta Klebsormidiophyceae Klebsormidiales Klebsormidiaceae Interfilum Interfilum sp. SAG 36.88
11105481 11105481 PRJNA927284_P_NODE_9389_length_150_cov_1.033058_g9182_i0 PRJNA927284 9389 150 1.033058 1.549587 Oryza sativa 4530 Plants Plants 161 1.95e-35   NTclustered gi|116641411|emb|CT836953.1| 39946 g9182 i0 87.075 1.36 147 13 96 5 6 149 609 752 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K09, full insert sequence blastn 204 161 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
14006602 14006602 PRJNA927284_P_NODE_7711_length_179_cov_5.053333_g7504_i0 PRJNA927284 7711 179 5.053333 9.04546607 Streptophyta 35493 Plants Plants 331 1.74e-86   NTclustered gi|1241931191|ref|NC_035860.1| 3281 g7504 i0 100 180 179 0 100 0 1 179 86772 86950 Onoclea sensibilis chloroplast, complete genome blastn 32220 331 1 Eukaryota Embryophyta Viridiplantae Streptophyta Polypodiopsida Polypodiales Onocleaceae Onoclea Onoclea sensibilis
14929798 14929798 PRJNA927284_P_NODE_6512_length_206_cov_1.807910_g6305_i0 PRJNA927284 6512 206 1.80791 3.7242946 Phaseolus vulgaris 3885 Plants Plants 302 1.62e-77   NTclustered gi|1142584|emb|Z48778.1| 3885 g6305 i0 98.817 1.00485436893204 169 2 100 0 1 169 10 178 P.vulgaris rDNA intergenic spacer subrepeat blastn 207 302 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Phaseolus Phaseolus vulgaris
14929812 14929812 PRJNA927284_P_NODE_8732_length_161_cov_2.068182_g8525_i0 PRJNA927284 8732 161 2.068182 3.32977302 Vigna angularis 3914 Plants Plants 99 1.69e-16   NTclustered gi|2418129916|ref|XM_052879013.1| 3914 g8525 i0 77.987 88.8695652173913 159 33 99 2 1 159 778 934 PREDICTED: Vigna angularis uncharacterized LOC128197374 (LOC128197374), mRNA blastn 14308 99 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Vigna Vigna angularis
15280552 15280552 PRJNA927284_P_NODE_7072_length_192_cov_3.717791_g6865_i0 PRJNA927284 7072 192 3.717791 7.13815872 Magnoliopsida 3398 Plants Plants 307 3.2e-79   NTclustered gi|2720893215|gb|PP719342.1| 43235 g6865 i0 98.837 89.65625 172 2 90 0 1 172 1788 1617 Englerina woodfordioides voucher PE CPG28675 Z.D. Chen et al. 28675 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17214 309 0.993527508090615 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Santalales Loranthaceae Englerina Englerina woodfordioides
16204846 16204846 PRJNA927284_P_NODE_5493_length_238_cov_2.502392_g5286_i0 PRJNA927284 5493 238 2.502392 5.95569296 Ribes rubrum 175228 Plants Plants 52.8 0.021   NTclustered gi|2918370030|emb|OZ237958.1| 175228 g5286 i0 100 0.117647058823529 28 0 12 0 24 51 5080306 5080333 Ribes rubrum genome assembly, chromosome: 8 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Saxifragales Grossulariaceae Ribes Ribes rubrum
16204865 16204865 PRJNA927284_P_NODE_8213_length_170_cov_1.900709_g8006_i0 PRJNA927284 8213 170 1.900709 3.2312053 Glycine max 3847 Plants Plants 52.8 0.014   NTclustered gi|332144645|dbj|AP011812.1| 3847 g8006 i0 96.875 0.376470588235294 32 0 18 1 50 80 27959 27990 Glycine max DNA, BAC clone: MiB309A12, complete sequence blastn 64 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
16555056 16555056 PRJNA927284_P_NODE_3533_length_339_cov_3.641935_g3328_i0 PRJNA927284 3533 339 3.641935 12.34615965 Streptophyta 35493 Plants Plants 592 1.5299999999999996e-164   NTclustered gi|2314712628|emb|OX344767.1| 28468 g3328 i0 99.387 170.212389380531 326 2 96 0 1 326 92362 92687 Rhytidiadelphus loreus genome assembly, organelle: plastid:chloroplast blastn 57702 597 0.991624790619765 Eukaryota Embryophyta Viridiplantae Streptophyta Bryopsida Hypnales Hylocomiaceae Rhytidiadelphus Rhytidiadelphus loreus
16555061 16555061 PRJNA927284_P_NODE_6893_length_196_cov_2.676647_g6686_i0 PRJNA927284 6893 196 2.676647 5.24622812 Eukaryota 2759 Plants Plants 363 6.899999999999998e-96   NTclustered gi|115430545|emb|CT837767.1| 39946 g6686 i0 100 95.7602040816327 196 0 100 0 1 196 664 859 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115O12, full insert sequence blastn 18769 363 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
17830064 17830064 PRJNA927284_P_NODE_7714_length_179_cov_2.820000_g7507_i0 PRJNA927284 7714 179 2.82 5.0478 Orthotrichum 52990 Plants Plants 285 1.3699999999999998e-72   NTclustered gi|1419383928|gb|MH133388.1| 122744 g7507 i0 99.363 89.2458100558659 157 1 88 0 1 157 157 1 Orthotrichum pumilum isolate 26S_113 26S ribosomal RNA gene, partial sequence blastn 15975 287 0.993031358885017 Eukaryota Embryophyta Viridiplantae Streptophyta Bryopsida Orthotrichales Orthotrichaceae Orthotrichum Orthotrichum pumilum
19104016 19104016 PRJNA927284_P_NODE_3235_length_361_cov_13.385542_g3030_i0 PRJNA927284 3235 361 13.385542 48.32180662 Eukaryota 2759 Plants Plants 636 7.429999999999999e-178   NTclustered gi|1702291457|gb|MN174867.1| 82485 g3030 i0 98.607 105.315789473684 359 5 99 0 3 361 4043 4401 Trillium govanianum voucher CL1804 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 38019 636 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Liliales Melanthiaceae Trillium Trillium govanianum
21654824 21654824 PRJNA927284_P_NODE_8137_length_171_cov_3.028169_g7930_i0 PRJNA927284 8137 171 3.028169 5.17816899 Streptophyta 35493 Plants Plants 313 5.95e-81   NTclustered gi|486172263|gb|JX241569.1| 3213 g7930 i0 100 184.859649122807 169 0 99 0 1 169 28 196 Polytrichum commune large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 31611 316 0.990506329113924 Eukaryota Embryophyta Viridiplantae Streptophyta Polytrichopsida Polytrichales Polytrichaceae Polytrichum Polytrichum commune
22579017 22579017 PRJNA927284_P_NODE_6398_length_209_cov_2.933333_g6191_i0 PRJNA927284 6398 209 2.933333 6.13066597 Justicia demissa 1685546 Plants Plants 387 4.42e-103   NTclustered gi|2482680364|gb|OQ785890.1| 1685546 g6191 i0 100 105.703349282297 209 0 100 0 1 209 5819 5611 Justicia demissa small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 22092 387 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Acanthaceae Justicia Justicia demissa
22930336 22930336 PRJNA927284_P_NODE_5598_length_234_cov_3.229268_g5391_i0 PRJNA927284 5598 234 3.229268 7.55648712 Orthotrichaceae 52989 Plants Plants 416 6.449999999999999e-112   NTclustered gi|817527089|ref|NC_026979.1| 61564 g5391 i0 98.718 163.807692307692 234 3 100 0 1 234 86482 86715 Nyholmiella obtusifolia chloroplast, complete genome blastn 38331 416 1 Eukaryota Embryophyta Viridiplantae Streptophyta Bryopsida Orthotrichales Orthotrichaceae Orthotrichum Orthotrichum obtusifolium
23854131 23854131 PRJNA927284_P_NODE_2919_length_387_cov_10.382682_g2717_i0 PRJNA927284 2919 387 10.382682 40.18097934 Oryza sativa 4530 Plants Plants 460 5.18e-125   NTclustered gi|116640607|emb|CT836548.1| 39946 g2717 i0 88.144 503.894056847545 388 44 100 2 1 387 395 9 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126A09, full insert sequence blastn 195007 460 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
24204108 24204108 PRJNA927284_P_NODE_7599_length_181_cov_3.440789_g7392_i0 PRJNA927284 7599 181 3.440789 6.22782809 Solanaceae 4070 Plants Plants 329 6.340000000000001e-86   NTclustered gi|2839189188|ref|XR_011219215.1| 4081 g7392 i0 99.448 100 181 1 100 0 1 181 632 812 PREDICTED: Solanum lycopersicum 28S ribosomal RNA (LOC138346485), rRNA blastn 18100 329 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
25479155 25479155 PRJNA927284_P_NODE_1160_length_699_cov_3.777612_g1020_i0 PRJNA927284 1160 699 3.777612 26.40550788 Orthotrichaceae 52989 Plants Plants 1219 0   NTclustered gi|817527089|ref|NC_026979.1| 61564 g1020 i0 99.406 168.474964234621 673 3 96 1 1 672 91398 92070 Nyholmiella obtusifolia chloroplast, complete genome blastn 117764 1225 0.995102040816327 Eukaryota Embryophyta Viridiplantae Streptophyta Bryopsida Orthotrichales Orthotrichaceae Orthotrichum Orthotrichum obtusifolium
25479159 25479159 PRJNA927284_P_NODE_3340_length_353_cov_7.879630_g3135_i0 PRJNA927284 3340 353 7.87963 27.8150939 Eukaryota 2759 Plants Plants 610 4.39e-170   NTclustered gi|2839186375|ref|XR_011216401.1| 4081 g3135 i0 98.006 100.118980169972 351 7 99 0 3 353 1013 663 PREDICTED: Solanum lycopersicum 18S ribosomal RNA (LOC138343606), rRNA blastn 35342 616 0.99025974025974 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;