RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA927284" and tax_phylum = "Brachiopoda"

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tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA927284 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7279903 7279903 PRJNA927284_P_NODE_246_length_1599_cov_5.121019_g198_i0 PRJNA927284 246 1599 5.121019 81.88509381 Lingula anatina 7574 Brachiopoda other_Eukaryota 854 0   NTclustered gi|918998038|ref|XM_013539389.1| 7574 g198 i0 83.156 53.4065040650407 938 155 59 3 113 1048 137 1073 PREDICTED: Lingula anatina serine/threonine-protein phosphatase alpha-2 isoform (LOC106162205), transcript variant X1, mRNA blastn 85397 854 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
14929802 14929802 PRJNA927284_P_NODE_712_length_937_cov_2.171806_g599_i0 PRJNA927284 712 937 2.171806 20.34982222 Lingula anatina 7574 Brachiopoda other_Eukaryota 237 2.44e-57   NTclustered gi|1351361185|ref|XM_013529356.2| 7574 g599 i0 77.5 0.426894343649947 400 86 42 4 509 906 539 936 PREDICTED: Lingula anatina coatomer subunit epsilon (LOC106154840), mRNA blastn 400 237 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
17479991 17479991 PRJNA927284_P_NODE_534_length_1093_cov_2.318609_g442_i0 PRJNA927284 534 1093 2.318609 25.34239637 Lingula anatina 7574 Brachiopoda other_Eukaryota 257 2.2e-63   NTclustered gi|919100330|ref|XM_013531123.1| 7574 g442 i0 78.072 4.80695333943275 415 85 38 5 3 414 2468 2879 PREDICTED: Lingula anatina alpha-actinin, sarcomeric (LOC106156043), transcript variant X2, mRNA blastn 5254 257 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;