RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA927284" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA927284 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14006604 14006604 PRJNA927284_P_NODE_8311_length_168_cov_2.330935_g8104_i0 PRJNA927284 8311 168 2.330935 3.9159708 Cyanobacterium 102234 Bacteria Bacteria 311 2.11e-80   NTclustered gi|2065699643|gb|MZ542553.1| 1211 g8104 i0 100 99.9464285714286 168 0 100 0 1 168 380 213 Uncultured cyanobacterium clone cASV8 16S ribosomal RNA gene, partial sequence blastn 16791 311 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium
19104027 19104027 PRJNA927284_P_NODE_7435_length_184_cov_3.348387_g7228_i0 PRJNA927284 7435 184 3.348387 6.16103208 root 1 Root_unresolved Root_unresolved 324 3.01e-84   NTclustered gi|146429953|gb|EF220769.1| 1211 g7228 i0 98.37 153 184 3 100 0 1 184 467 284 Uncultured cyanobacterium clone B07_MO03 16S ribosomal RNA gene, partial sequence blastn 28152 324 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium
22579031 22579031 PRJNA927284_P_NODE_7918_length_176_cov_1.564626_g7711_i0 PRJNA927284 7918 176 1.564626 2.75374176 Nodosilinea sp. E11 3037479 Bacteria Bacteria 52.8 0.015   NTclustered gi|2593238647|gb|CP136520.1| 3037479 g7711 i0 100 0.159090909090909 28 0 16 0 85 112 2895928 2895955 Nodosilinea sp. E11 chromosome blastn 28 52.8 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nodosilineales Nodosilineaceae Nodosilinea Nodosilinea sp. E11

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;