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contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJNA924320" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 20 ✖

tax_clade 1

bioproject 1

  • PRJNA924320 · 20 ✖

analysis 1

  • blastn · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7277218 7277218 PRJNA924320_S_NODE_19886_length_232_cov_1.409836_g19744_i0 PRJNA924320 19886 232 1.409836 3.27081952 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 189 1.5199999999999996e-43   NTclustered gi|695434207|ref|XM_009533074.1| 67593 g19744 i0 84.817 4.39655172413793 191 25 81 4 17 205 189 1 Phytophthora sojae hypothetical protein partial mRNA blastn 1020 189 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
7630299 7630299 PRJNA924320_S_NODE_43026_length_172_cov_1.105691_g42884_i0 PRJNA924320 43026 172 1.105691 1.90178852 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 128 2.33e-25   NTclustered gi|1233049511|gb|KX250429.1| 89334 g42884 i0 86.066 65.1976744186046 122 13 70 2 53 172 573 692 Phytophthora clandestina isolate 33D8(authentic) heat shock protein 90 gene, partial cds blastn 11214 128 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora clandestina
8552059 8552059 PRJNA924320_S_NODE_21107_length_227_cov_1.146067_g20965_i0 PRJNA924320 21107 227 1.146067 2.60157209 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.02   NTclustered gi|187467949|emb|CU694291.4| 123356 g20965 i0 100 0.246696035242291 28 0 12 0 19 46 127711 127738 H.parasitica DNA sequence from clone HpEmoy2-20H4, complete sequence blastn 56 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
11102666 11102666 PRJNA924320_S_NODE_23129_length_219_cov_1.800000_g22987_i0 PRJNA924320 23129 219 1.8 3.942 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 80.5 8.89e-11   NTclustered gi|813114431|ref|XM_012339984.1| 695850 g22987 i0 94.231 0.698630136986301 52 3 24 0 99 150 951 900 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 153 80.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
12378352 12378352 PRJNA924320_S_NODE_3810_length_480_cov_2.617169_g3670_i0 PRJNA924320 3810 480 2.617169 12.5624112 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 220 1.2099999999999997e-52   NTclustered gi|2795024423|ref|XM_067938288.1| 4785 g3670 i0 79.077 15.8020833333333 325 64 67 4 158 480 518 196 Phytophthora cinnamomi 60S ribosomal protein (IUM83_13598), partial mRNA blastn 7585 220 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
12731613 12731613 PRJNA924320_S_NODE_17570_length_244_cov_1.200000_g17428_i0 PRJNA924320 17570 244 1.2 2.928 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 176 1.25e-39   NTclustered gi|133872858|gb|EF452181.1| 431833 g17428 i0 79.918 43.9098360655738 244 45 99 4 1 242 262 503 Phytophthora sp. H-6/02 translation elongation factor 1 alpha gene, partial cds blastn 10714 176 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sp. H-6/02
14006215 14006215 PRJNA924320_S_NODE_51911_length_164_cov_0.886957_g51769_i0 PRJNA924320 51911 164 0.886957 1.45460948 Lagenidium 4802 SAR_Eukaryotes SAR_Eukaryotes 135 1.32e-27   NTclustered gi|627615088|gb|KJ506102.1| 4803 g51769 i0 86.29 93.8963414634146 124 17 76 0 35 158 417 294 Lagenidium giganteum isolate MTLA16 heat shock protein 90 (HSP90) gene, partial cds blastn 15399 135 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
14926986 14926986 PRJNA924320_S_NODE_12592_length_280_cov_1.554113_g12450_i0 PRJNA924320 12592 280 1.554113 4.3515164 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 117 9.02e-22   NTclustered gi|673039884|ref|XM_008875681.1| 157072 g12450 i0 89.362 1.08571428571429 94 8 33 2 8 100 367 459 Aphanomyces invadans 60S ribosomal protein mRNA blastn 304 117 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
16202097 16202097 PRJNA924320_S_NODE_24153_length_216_cov_1.065868_g24011_i0 PRJNA924320 24153 216 1.065868 2.30227488 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 99 2.41e-16   NTclustered gi|669149903|ref|XM_008612292.1| 1156394 g24011 i0 80.137 1.1712962962963 146 17 63 8 57 193 285 143 Saprolegnia diclina VS20 hypothetical protein mRNA blastn 253 99 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
16202289 16202289 PRJNA924320_S_NODE_47393_length_166_cov_1.743590_g47251_i0 PRJNA924320 47393 166 1.74359 2.8943594 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 147 6.2e-31   NTclustered gi|675199240|ref|XM_008910257.1| 761204 g47251 i0 83.133 52.921686746988 166 22 100 3 1 166 831 990 Phytophthora parasitica INRA-310 ATP synthase subunit beta, mitochondrial mRNA blastn 8785 147 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
17477225 17477225 PRJNA924320_S_NODE_14374_length_265_cov_1.416667_g14232_i0 PRJNA924320 14374 265 1.416667 3.75416755 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 148 3.0000000000000003e-31   NTclustered gi|675196844|ref|XM_008909059.1| 761204 g14232 i0 79.71 15.788679245283 207 40 78 2 51 256 899 694 Phytophthora parasitica INRA-310 60S ribosomal protein L3 mRNA blastn 4184 148 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
17477248 17477248 PRJNA924320_S_NODE_1734_length_694_cov_4.015504_g1620_i0 PRJNA924320 1734 694 4.015504 27.86759776 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 213 3e-50   NTclustered gi|813133999|ref|XM_012342618.1| 695850 g1620 i0 81.89 3.76080691642651 254 44 36 2 377 629 324 72 Saprolegnia parasitica CBS 223.65 ribonucleoprotein-associated protein mRNA blastn 2610 213 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
17477417 17477417 PRJNA924320_S_NODE_38854_length_179_cov_2.092308_g38712_i0 PRJNA924320 38854 179 2.092308 3.74523132 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 152 1.45e-32   NTclustered gi|698801103|ref|XM_009835279.1| 112090 g38712 i0 91.818 71.4860335195531 110 7 61 2 1 109 794 686 Aphanomyces astaci adenosylhomocysteinase 2 mRNA blastn 12796 152 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
17829729 17829729 PRJNA924320_S_NODE_47354_length_166_cov_1.829060_g47212_i0 PRJNA924320 47354 166 1.82906 3.0362396 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 161 2.21e-35   NTclustered gi|178948273|gb|EU596364.1| 516998 g47212 i0 85.806 91.421686746988 155 18 92 4 12 164 261 109 Phytophthora sp. KACC 40914 translation elongation factor 1-alpha (EF1A) gene, partial cds blastn 15176 161 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sp. KACC 40914
18750666 18750666 PRJNA924320_S_NODE_15035_length_260_cov_1.208531_g14893_i0 PRJNA924320 15035 260 1.208531 3.1421806 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 198 2.88e-46   NTclustered gi|301105358|ref|XM_002901717.1| 403677 g14893 i0 82.251 22.2115384615385 231 39 88 2 31 260 3956 3727 Phytophthora infestans T30-4 pre-mRNA-processing-splicing factor 8 (PITG_10969), partial mRNA blastn 5775 198 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
21654426 21654426 PRJNA924320_S_NODE_33557_length_190_cov_2.056738_g33415_i0 PRJNA924320 33557 190 2.056738 3.9078022 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 235 1.5099999999999998e-57   NTclustered gi|2795052452|ref|XM_067926699.1| 4785 g33415 i0 88.947 20.1526315789474 190 21 100 0 1 190 353 164 Phytophthora cinnamomi caltractin (IUM83_02754), partial mRNA blastn 3829 235 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
22576135 22576135 PRJNA924320_S_NODE_18638_length_238_cov_1.544974_g18496_i0 PRJNA924320 18638 238 1.544974 3.67703812 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 180 9.399999999999999e-41   NTclustered gi|301105318|ref|XM_002901697.1| 403677 g18496 i0 80.603 4.95798319327731 232 45 97 0 1 232 1450 1219 Phytophthora infestans T30-4 elongation factor 2 (PITG_10941), mRNA blastn 1180 180 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
25125095 25125095 PRJNA924320_S_NODE_14680_length_262_cov_3.483568_g14538_i0 PRJNA924320 14680 262 3.483568 9.12694816 Halophytophthora celeris 2874299 SAR_Eukaryotes SAR_Eukaryotes 134 8.300000000000001e-27   NTclustered gi|2213903280|gb|OK091322.1| 2874299 g14538 i0 82.895 45.4503816793893 152 23 57 1 89 237 465 314 Halophytophthora sp. MHJ-2021b isolate CBS 147240 from Portugal heat shock protein 90 (hsp90) gene, partial cds blastn 11908 134 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Halophytophthora Halophytophthora celeris
25125223 25125223 PRJNA924320_S_NODE_30700_length_197_cov_1.209459_g30558_i0 PRJNA924320 30700 197 1.209459 2.38263423 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 154 4.55e-33   NTclustered gi|2795052452|ref|XM_067926699.1| 4785 g30558 i0 93.269 48.9593908629442 104 7 53 0 94 197 519 416 Phytophthora cinnamomi caltractin (IUM83_02754), partial mRNA blastn 9645 154 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
25125527 25125527 PRJNA924320_S_NODE_7700_length_348_cov_1.474916_g7558_i0 PRJNA924320 7700 348 1.474916 5.13270768 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.003   NTclustered gi|813126131|ref|XM_012341540.1| 695850 g7558 i0 81.944 0.206896551724138 72 8 20 5 30 100 571 638 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 72 56.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;