RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA924320" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA924320 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7277143 7277143 PRJNA924320_S_NODE_10266_length_306_cov_3.494163_g10124_i0 PRJNA924320 10266 306 3.494163 10.69213878 Strongyloides ratti 34506 Nematoda Nematoda 52.8 0.029   NTclustered gi|1376143153|ref|XM_024651938.1| 34506 g10124 i0 90 0.130718954248366 40 4 13 0 56 95 2338 2299 Strongyloides ratti Collagen alpha-2(IV) chain (SRAE_2000103500), partial mRNA blastn 40 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
8904982 8904982 PRJNA924320_S_NODE_20787_length_228_cov_1.709497_g20645_i0 PRJNA924320 20787 228 1.709497 3.89765316 Pristionchus 54125 Nematoda Nematoda 128 3.28e-25   NTclustered gi|150984730|gb|EF634951.1| 70414 g20645 i0 82.667 65.6008771929825 150 20 64 6 44 190 195 49 Pristionchus lheritieri small subunit ribosomal protein 25 (rps-25) mRNA, partial cds blastn 14957 128 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus lheritieri
11102888 11102888 PRJNA924320_S_NODE_50109_length_165_cov_0.879310_g49967_i0 PRJNA924320 50109 165 0.87931 1.4508615 Strongyloides ratti 34506 Nematoda Nematoda 176 7.85e-40   NTclustered gi|1376154049|ref|XM_024646386.1| 34506 g49967 i0 87.097 27.6181818181818 155 20 94 0 11 165 987 1141 Strongyloides ratti V-type proton ATPase subunit B, kidney (SRAE_X000121000), partial mRNA blastn 4557 176 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
12378558 12378558 PRJNA924320_S_NODE_9450_length_318_cov_1.936803_g9308_i0 PRJNA924320 9450 318 1.936803 6.15903354 Pristionchus americanus 376549 Nematoda Nematoda 222 2.15e-53   NTclustered gi|150982255|gb|EF634716.1| 376549 g9308 i0 82.129 65.4150943396226 263 43 82 4 32 292 290 30 Pristionchus americanus large subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 20802 222 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus americanus
18750847 18750847 PRJNA924320_S_NODE_38295_length_180_cov_2.442748_g38153_i0 PRJNA924320 38295 180 2.442748 4.3969464 Necator americanus 51031 Nematoda Nematoda 58.4 3.28e-4   NTclustered gi|2707571125|ref|XM_013453164.2| 51031 g38153 i0 100 0.577777777777778 31 0 17 0 40 70 2673 2703 Necator americanus uncharacterized protein (RB195_009825), partial mRNA blastn 104 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
21301243 21301243 PRJNA924320_S_NODE_37617_length_182_cov_1.150376_g37475_i0 PRJNA924320 37617 182 1.150376 2.09368432 Strongyloides ratti 34506 Nematoda Nematoda 143 8.93e-30   NTclustered gi|1376146183|ref|XM_024653652.1| 34506 g37475 i0 81.081 2.04395604395604 185 29 100 6 1 182 930 749 Strongyloides ratti ATP synthase subunit beta (SRAE_2000256800), partial mRNA blastn 372 143 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
22576516 22576516 PRJNA924320_S_NODE_58338_length_158_cov_3.238532_g58196_i0 PRJNA924320 58338 158 3.238532 5.11688056 Heterorhabditis bacteriophora 37862 Nematoda Nematoda 213 5.66e-51   NTclustered gi|1963716464|emb|LR890122.1| 37862 g58196 i0 91.083 81.5759493670886 157 14 99 0 1 157 196 40 Heterorhabditis bacteriophora partial mRNA for Hb-hsp90-5 isoform (Hb-hsp90-5 isoform gene), clone 23 blastn 12889 213 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heterorhabditidae Heterorhabditis Heterorhabditis bacteriophora

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;