RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA924320" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA924320 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2174620 2174620 PRJNA924320_S_NODE_45242_length_168_cov_1.285714_g45100_i0 PRJNA924320 45242 168 1.285714 2.15999952 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 152 1.35e-32   NTclustered gi|470527463|ref|XM_004357106.1| 1257118 g45100 i0 90.517 14.6130952380952 116 9 68 2 1 115 1486 1372 Acanthamoeba castellanii str. Neff DEAD/DEAH box helicase domain containing protein (ACA1_110090), partial mRNA blastn 2455 152 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
3450158 3450158 PRJNA924320_S_NODE_4303_length_454_cov_1.849383_g4162_i0 PRJNA924320 4303 454 1.849383 8.39619882 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 58.4 0.001   NTclustered gi|470469416|ref|XM_004341948.1| 1257118 g4162 i0 83.077 0.143171806167401 65 9 14 2 374 437 884 821 Acanthamoeba castellanii str. Neff MORN repeatcontaining protein (ACA1_050500), partial mRNA blastn 65 58.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14926983 14926983 PRJNA924320_S_NODE_12032_length_285_cov_6.949153_g11890_i0 PRJNA924320 12032 285 6.949153 19.80508605 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 108 5.54e-19   NTclustered gi|470458047|ref|XM_004341152.1| 1257118 g11890 i0 89.412 8.17543859649123 85 9 30 0 1 85 147 231 Acanthamoeba castellanii str. Neff polyubiquitin, putative (ACA1_335920), partial mRNA blastn 2330 108 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20025758 20025758 PRJNA924320_S_NODE_17556_length_244_cov_1.282051_g17414_i0 PRJNA924320 17556 244 1.282051 3.12820444 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 257 4.35e-64   NTclustered gi|470504026|ref|XM_004348289.1| 1257118 g17414 i0 85.772 91.7540983606557 246 31 100 4 1 244 1189 946 Acanthamoeba castellanii str. Neff H(+)-transporting atpase family protein (ACA1_022710), partial mRNA blastn 22388 257 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22576345 22576345 PRJNA924320_S_NODE_40778_length_176_cov_1.149606_g40636_i0 PRJNA924320 40778 176 1.149606 2.02330656 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 91.6 3.15e-14   NTclustered gi|470459156|ref|XM_004341277.1| 1257118 g40636 i0 80.469 0.727272727272727 128 17 73 5 17 144 557 438 Acanthamoeba castellanii str. Neff ribosomal protein L3, putative (ACA1_264110), partial mRNA blastn 128 91.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
25125076 25125076 PRJNA924320_S_NODE_11840_length_287_cov_2.773109_g11698_i0 PRJNA924320 11840 287 2.773109 7.95882283 Stenamoeba dejonckheerei 2730938 Discosea other_Eukaryota 191 5.390000000000001e-44   NTclustered gi|1835259542|gb|MT386405.1| 2730938 g11698 i0 81.2 93.3867595818815 250 36 86 7 1 248 1919 1679 Stenamoeba dejonckheerei strain 32 small subunit ribosomal RNA gene, partial sequence blastn 26802 191 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Stenamoeba Stenamoeba dejonckheerei
25125098 25125098 PRJNA924320_S_NODE_15160_length_259_cov_1.438095_g15018_i0 PRJNA924320 15160 259 1.438095 3.72466605 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 204 6.149999999999998e-48   NTclustered gi|470531494|ref|XM_004358017.1| 1257118 g15018 i0 84.211 25.7606177606178 209 33 81 0 3 211 1370 1162 Acanthamoeba castellanii str. Neff ribonucleosidediphosphate reductase, alpha subunit (ACA1_119180), partial mRNA blastn 6672 204 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;