RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA924320" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA924320 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8552172 8552172 PRJNA924320_S_NODE_34707_length_188_cov_1.273381_g34565_i0 PRJNA924320 34707 188 1.273381 2.39395628 Eimeria acervulina 5801 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.001   NTclustered gi|915004916|ref|XM_013394120.1| 5801 g34565 i0 94.444 0.191489361702128 36 2 19 0 138 173 230 195 Eimeria acervulina hypothetical protein, conserved partial mRNA blastn 36 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina
11102665 11102665 PRJNA924320_S_NODE_23049_length_220_cov_0.847953_g22907_i0 PRJNA924320 23049 220 0.847953 1.8654966 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.019   NTclustered gi|1472910588|ref|XM_026338399.1| 88456 g22907 i0 100 0.127272727272727 28 0 13 0 38 65 1230 1203 PREDICTED: Cyclospora cayetanensis AF4/FMR2 family member 4-like (LOC113147528), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
16554667 16554667 PRJNA924320_S_NODE_35933_length_185_cov_1.875000_g35791_i0 PRJNA924320 35933 185 1.875 3.46875 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 122 1.19e-23   NTclustered gi|2794940381|ref|XM_067858927.1| 5871 g35791 i0 83.582 7.80540540540541 134 18 71 3 52 183 1053 922 Babesia caballi 26S protease regulatory subunit 4, putative (BcabD6B2_23940), partial mRNA blastn 1444 122 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia caballi
17829725 17829725 PRJNA924320_S_NODE_44094_length_170_cov_1.264463_g43952_i0 PRJNA924320 44094 170 1.264463 2.1495871 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.014   NTclustered gi|916510764|ref|XM_013500156.1| 44415 g43952 i0 100 0.494117647058824 28 0 16 0 64 91 2624 2651 Eimeria mitis leucyl-tRNA synthetase, putative (EMH_0014560), partial mRNA blastn 84 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
22576168 22576168 PRJNA924320_S_NODE_22178_length_223_cov_1.086207_g22036_i0 PRJNA924320 22178 223 1.086207 2.42224161 Cryptosporidium sp. chipmunk genotype I 1280935 SAR_Eukaryotes SAR_Eukaryotes 119 1.92e-22   NTclustered gi|2787703545|ref|XM_067346096.1| 1280935 g22036 i0 86.486 0.497757847533632 111 12 49 3 85 193 119 10 Cryptosporidium sp. chipmunk genotype I ribosomal RPL10 (ELE39_002992), partial mRNA blastn 111 119 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium sp. chipmunk genotype I
22929940 22929940 PRJNA924320_S_NODE_16178_length_252_cov_2.320197_g16036_i0 PRJNA924320 16178 252 2.320197 5.84689644 Toxoplasma 5810 SAR_Eukaryotes SAR_Eukaryotes 176 1.3e-39   NTclustered gi|260234056|dbj|AK318461.1| 5811 g16036 i0 80.87 7.15873015873016 230 38 90 5 21 247 308 82 Toxoplasma gondii cDNA, clone: XTG05328.2, full cDNA, XTG Sugano cDNA library blastn 1804 176 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;