RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA924320" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA924320 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
899126 899126 PRJNA924320_S_NODE_2721_length_561_cov_2.449219_g2585_i0 PRJNA924320 2721 561 2.449219 13.74011859 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 237 1.42e-57   NTclustered gi|2621704042|emb|OY760734.1| 2910147 g2585 i0 80.308 6.80035650623886 325 54 57 9 227 546 1145533 1145214 MAG: Vicinamibacterales bacterium isolate 10b48155-431e-4809-9d43-759f23ff96f9 genome assembly, chromosome: 1 blastn 3815 237 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
2527881 2527881 PRJNA924320_S_NODE_31082_length_196_cov_1.367347_g30940_i0 PRJNA924320 31082 196 1.367347 2.68000012 Bacteria 2 Bacteria Bacteria 93.5 9.99e-15   NTclustered gi|76574296|gb|DQ139444.1| 171953 g30940 i0 82.857 3.70408163265306 105 16 54 2 33 137 1509 1407 Uncultured Acidobacteria bacterium clone CAL5 23S ribosomal RNA gene, partial sequence blastn 726 93.5 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;