RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA924320" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA924320 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4727703 4727703 PRJNA924320_S_NODE_33804_length_190_cov_1.085106_g33662_i0 PRJNA924320 33804 190 1.085106 2.0617014 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 93.5 9.62e-15   NTclustered gi|2874254106|emb|OY970189.1| 100233 g33662 i0 90.141 4.61052631578947 71 7 37 0 75 145 1166916 1166846 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 876 93.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
11102591 11102591 PRJNA924320_S_NODE_12709_length_279_cov_1.508696_g12567_i0 PRJNA924320 12709 279 1.508696 4.20926184 Kolteria novifilia 2527975 Bacteria Bacteria 52.8 0.026   NTclustered gi|1712629967|gb|CP036279.1| 2527975 g12567 i0 100 0.100358422939068 28 0 10 0 73 100 4875783 4875810 Planctomycetes bacterium Pan216 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Kolteriales Kolteriaceae Kolteria Kolteria novifilia
23851325 23851325 PRJNA924320_S_NODE_16039_length_253_cov_1.642157_g15897_i0 PRJNA924320 16039 253 1.642157 4.15465721 Paludisphaera borealis 1387353 Bacteria Bacteria 180 1.01e-40   NTclustered gi|1133581311|gb|CP019082.1| 1387353 g15897 i0 82.843 84.9288537549407 204 31 80 4 14 215 5395641 5395440 Paludisphaera borealis strain PX4 chromosome, complete genome blastn 21487 180 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Paludisphaera Paludisphaera borealis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;