RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA924320" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA924320 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3449951 3449951 PRJNA924320_S_NODE_2143_length_631_cov_3.702749_g2017_i0 PRJNA924320 2143 631 3.702749 23.36434619 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 95.3 1.03e-14   NTclustered gi|551606591|ref|XM_005784584.1| 280463 g2017 i0 83.838 2.48494453248811 99 16 16 0 1 99 215 313 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 1568 95.3 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
4727642 4727642 PRJNA924320_S_NODE_26864_length_207_cov_1.911392_g26722_i0 PRJNA924320 26864 207 1.911392 3.95658144 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 65.8 2.33e-6   NTclustered gi|551557123|ref|XM_005765587.1| 280463 g26722 i0 95.122 0.198067632850242 41 2 20 0 146 186 447 407 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 41 65.8 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
25125141 25125141 PRJNA924320_S_NODE_20380_length_230_cov_1.160221_g20238_i0 PRJNA924320 20380 230 1.160221 2.6685083 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 215 2.47e-51   NTclustered gi|551557925|ref|XM_005765918.1| 280463 g20238 i0 85.047 15.304347826087 214 29 92 3 19 230 1573 1785 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 3520 215 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;