RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA922890" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA922890 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2173062 2173062 PRJNA922890_P_NODE_25322_length_378_cov_1.588997_g24912_i0 PRJNA922890 25322 378 1.588997 6.00640866 Didymium megalosporum 289980 Evosea other_Eukaryota 431 3.96e-116   NTclustered gi|529177860|gb|KC814167.1| 289980 g24912 i0 88.483 98 356 41 94 0 21 376 1064 709 Didymium megalosporum alpha-tubulin gene, partial cds blastn 37044 431 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium megalosporum
6001719 6001719 PRJNA922890_P_NODE_71445_length_234_cov_0.884848_g71035_i0 PRJNA922890 71445 234 0.884848 2.07054432 Dictyostelium purpureum 5786 Evosea other_Eukaryota 198 2.54e-46   NTclustered gi|330790587|ref|XM_003283330.1| 5786 g71035 i0 83.333 132.782051282051 216 34 92 2 1 215 781 995 Dictyostelium purpureum ubiquitin (DICPUDRAFT_44796), mRNA blastn 31071 198 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
12731357 12731357 PRJNA922890_P_NODE_34110_length_328_cov_2.220077_g33700_i0 PRJNA922890 34110 328 2.220077 7.28185256 Entamoeba 5758 Evosea other_Eukaryota 154 8.22e-33   NTclustered gi|642231|emb|X84010.1| 5759 g33700 i0 79.452 4.63719512195122 219 43 66 2 18 235 365 148 E.histolytica mRNA for histone H4 blastn 1521 154 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;