RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA922890" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA922890 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18749128 18749128 PRJNA922890_P_NODE_14755_length_498_cov_1.303030_g14347_i0 PRJNA922890 14755 498 1.30303 6.4890894 Ripella tribonemae 2047823 Discosea other_Eukaryota 797 0   NTclustered gi|1269228472|gb|MF683597.1| 2047823 g14347 i0 95.618 102.347389558233 502 12 100 7 1 498 1031 536 Ripella tribonemae clone 22.1.15 18S ribosomal RNA gene, partial sequence blastn 50969 797 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella tribonemae
20024280 20024280 PRJNA922890_P_NODE_20256_length_424_cov_1.095775_g19846_i0 PRJNA922890 20256 424 1.095775 4.646086 Vannella persistens 303303 Discosea other_Eukaryota 767 0   NTclustered gi|261599932|dbj|AB525840.1| 303303 g19846 i0 99.292 99.8372641509434 424 3 100 0 1 424 554 131 Vannella persistens gene for 18S ribosomal RNA, partial sequence, strain: NHE(Vp)1-IR blastn 42331 767 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella persistens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;