RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA917598" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA917598 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16199343 16199343 PRJNA917598_P_NODE_59213_length_293_cov_2.077273_g58269_i0 PRJNA917598 59213 293 2.077273 6.08640989 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 294 4.09e-75   NTclustered gi|2621704341|emb|OY760937.1| 2499141 g58269 i0 85.274 123.156996587031 292 36 99 7 1 289 3989696 3989983 MAG: Verrucomicrobiae bacterium isolate 066a7682-a1ac-48de-8761-1470dc9e5c3e genome assembly, chromosome: 1 blastn 36085 294 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
21298766 21298766 PRJNA917598_P_NODE_72057_length_268_cov_0.846154_g71113_i0 PRJNA917598 72057 268 0.846154 2.26769272 Pedosphaera parvula 1032527 Bacteria Bacteria 388 1.65e-103   NTclustered gi|183579829|emb|AM905426.1| 320771 g71113 i0 93.182 84.9365671641791 264 18 99 0 1 264 941 1204 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 22763 388 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
23848780 23848780 PRJNA917598_P_NODE_61859_length_287_cov_2.228972_g60915_i0 PRJNA917598 61859 287 2.228972 6.39714964 uncultured Ruficoccus sp. 2175960 Bacteria Bacteria 279 1.12e-70   NTclustered gi|2907625921|emb|OZ223481.1| 2175960 g60915 i0 85.874 105.435540069686 269 30 92 7 23 287 741277 741013 MAG: uncultured Ruficoccus sp. isolate b2a3d85c-2e17-47e2-9e32-7ac6437316b9 genome assembly, chromosome: 10 blastn 30260 279 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Cerasicoccaceae Ruficoccus uncultured Ruficoccus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;