RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA917598" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA917598 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2527289 2527289 PRJNA917598_P_NODE_75042_length_261_cov_1.585106_g74098_i0 PRJNA917598 75042 261 1.585106 4.13712666 Nitrospira 1234 Bacteria Bacteria 460 3.3399999999999995e-125   NTclustered gi|2290907019|gb|CP060499.1| 70125 g74098 i0 98.467 155.103448275862 261 4 100 0 1 261 2683650 2683390 MAG: Nitrospira sp. isolate DH1 chromosome, complete genome blastn 40482 460 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
3447926 3447926 PRJNA917598_P_NODE_85283_length_248_cov_0.880000_g84339_i0 PRJNA917598 85283 248 0.88 2.1824 Nitrospira sp. 70125 Bacteria Bacteria 414 2.48e-111   NTclustered gi|2194428397|gb|CP092079.1| 70125 g84339 i0 96.787 18.0483870967742 249 7 100 1 1 248 2119061 2119309 MAG: Nitrospira sp. isolate UBC3 chromosome blastn 4476 414 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
7274664 7274664 PRJNA917598_P_NODE_59246_length_293_cov_1.777273_g58302_i0 PRJNA917598 59246 293 1.777273 5.20740989 Nitrospira sp. 70125 Bacteria Bacteria 514 2.88e-141   NTclustered gi|2511640680|gb|CP126121.1| 70125 g58302 i0 98.294 244.501706484642 293 5 100 0 1 293 200922 200630 MAG: Nitrospira sp. isolate bin_001 chromosome, complete genome blastn 71639 514 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;