RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA917598" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA917598 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11099325 11099325 PRJNA917598_P_NODE_34549_length_391_cov_0.842767_g33605_i0 PRJNA917598 34549 391 0.842767 3.29521897 Strongyloides papillosus 174720 Nematoda Nematoda 195 5.87e-45   NTclustered gi|687022675|emb|LM525589.1| 174720 g33605 i0 83.575 35.7800511508951 207 34 53 0 184 390 172352 172146 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000012 blastn 13990 195 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
11099399 11099399 PRJNA917598_P_NODE_37449_length_375_cov_1.529801_g36505_i0 PRJNA917598 37449 375 1.529801 5.73675375 Plectonchus hunti 345504 Nematoda Nematoda 52.8 0.036   NTclustered gi|76560675|gb|DQ145700.1| 345504 g36505 i0 100 0.149333333333333 28 0 7 0 348 375 357 330 Plectonchus hunti 28S ribosomal RNA gene, partial sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Plectonchus Plectonchus hunti
20023776 20023776 PRJNA917598_P_NODE_87016_length_246_cov_1.768786_g86072_i0 PRJNA917598 87016 246 1.768786 4.35121356 Rhabditidoides sp. RS5443 669111 Nematoda Nematoda 137 5.96e-28   NTclustered gi|256709203|gb|GQ422254.1| 669111 g86072 i0 81.609 16.7276422764228 174 25 69 7 10 178 9 180 Rhabditidoides sp. RS5443 small subunit ribosomal protein 28 (rps-28) mRNA, partial cds blastn 4115 137 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Rhabditidoides Rhabditidoides sp. RS5443

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;