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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA917598" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA917598 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
897282 897282 PRJNA917598_P_NODE_96481_length_237_cov_3.786585_g95537_i0 PRJNA917598 96481 237 3.786585 8.97420645 Vannella sp. strain 4354/I 325074 Discosea other_Eukaryota 416 6.5499999999999985e-112   NTclustered gi|62865936|gb|AY929911.1| 325074 g95537 i0 98.312 87.0042194092827 237 4 100 0 1 237 771 1007 Vannella sp. strain 4354/I 18S small subunit ribosomal RNA gene, partial sequence blastn 20620 416 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain 4354/I
7273747 7273747 PRJNA917598_P_NODE_23026_length_483_cov_1.675610_g22084_i0 PRJNA917598 23026 483 1.67561 8.0931963 Acanthamoeba sp. 5756 Discosea other_Eukaryota 243 2.6e-59   NTclustered gi|1496296861|gb|MG924706.1| 5756 g22084 i0 76.559 83.0393374741201 465 95 95 11 11 468 629 172 Acanthamoeba sp. isolate OSU08-016 cytochrome c oxidase subunit I (COXI) gene, partial cds; mitochondrial blastn 40108 243 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
7275146 7275146 PRJNA917598_P_NODE_80286_length_251_cov_0.865169_g79342_i0 PRJNA917598 80286 251 0.865169 2.17157419 Acanthamoeba comandoni 65659 Discosea other_Eukaryota 113 1.03e-20   NTclustered gi|28194600|gb|AF479544.1| 65659 g79342 i0 76.777 25.6334661354582 211 44 83 4 2 210 894 687 Acanthamoeba comandoni strain ATCC 30135 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 6434 113 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba comandoni
11099081 11099081 PRJNA917598_P_NODE_24469_length_467_cov_3.081218_g23526_i0 PRJNA917598 24469 467 3.081218 14.38928806 Thecamoeba sp. 1973049 Discosea other_Eukaryota 111 7.38e-20   NTclustered gi|2716342294|gb|PP647606.1| 1973049 g23526 i0 84.034 0.481798715203426 119 15 25 1 204 318 908 1026 Thecamoeba sp. isolate SK13-4H small subunit ribosomal RNA gene, partial sequence blastn 225 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba sp.
11100720 11100720 PRJNA917598_P_NODE_91949_length_243_cov_1.682353_g91005_i0 PRJNA917598 91949 243 1.682353 4.08811779 Acanthamoeba polyphaga 5757 Discosea other_Eukaryota 329 9.04e-86   NTclustered gi|932090235|gb|KP054475.2| 5757 g91005 i0 91.701 6.04115226337449 241 15 99 4 1 240 476 240 Acanthamoeba polyphaga strain Linc Ap-1 mitochondrion, complete genome blastn 1468 329 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba polyphaga
13649571 13649571 PRJNA917598_P_NODE_40311_length_361_cov_2.145833_g39367_i0 PRJNA917598 40311 361 2.145833 7.74645713 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 243 1.89e-59   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g39367 i0 87.264 51.1412742382271 212 27 59 0 128 339 11157 10946 Thecamoeba quadrilineata mitochondrion, complete genome blastn 18462 243 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata
14005808 14005808 PRJNA917598_P_NODE_95591_length_241_cov_0.916667_g94647_i0 PRJNA917598 95591 241 0.916667 2.20916747 Paramoeba 200890 Discosea other_Eukaryota 182 2.65e-41   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g94647 i0 90.58 81.3236514522822 138 12 57 1 63 200 42184 42048 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 19599 182 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
14923914 14923914 PRJNA917598_P_NODE_4112_length_1225_cov_3.233507_g3493_i0 PRJNA917598 4112 1225 3.233507 39.61046075 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 804 0   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g3493 i0 80.818 3.71020408163265 1100 147 88 42 99 1173 10776 9716 Thecamoeba quadrilineata mitochondrion, complete genome blastn 4545 804 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata
17474121 17474121 PRJNA917598_P_NODE_37814_length_373_cov_2.056667_g36870_i0 PRJNA917598 37814 373 2.056667 7.67136791 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 595 1.3099999999999996e-165   NTclustered gi|330902858|gb|JF298255.1| 1017091 g36870 i0 95.467 23.3592493297587 375 14 100 3 1 373 656 1029 Cochliopodium larifeili clone 904 18S ribosomal RNA gene, partial sequence blastn 8713 595 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
18747975 18747975 PRJNA917598_P_NODE_55515_length_305_cov_3.745690_g54571_i0 PRJNA917598 55515 305 3.74569 11.4243545 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 501 2.35e-137   NTclustered gi|330902861|gb|JF298256.1| 1017091 g54571 i0 96.393 12.6295081967213 305 9 99 2 2 305 345 42 Cochliopodium larifeili clone 907 18S ribosomal RNA gene, partial sequence blastn 3852 501 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;