RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA917598" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA917598 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4725723 4725723 PRJNA917598_P_NODE_92404_length_243_cov_0.905882_g91460_i0 PRJNA917598 92404 243 0.905882 2.20129326 Eimeria tenella 5802 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.31e-4   NTclustered gi|916429067|ref|XM_013380309.1| 5802 g91460 i0 92.683 4.87654320987654 41 3 17 0 198 238 438 478 Eimeria tenella 2-oxoglutarate dehydrogenase, putative (ETH_00028175), partial mRNA blastn 1185 60.2 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
8549237 8549237 PRJNA917598_P_NODE_53067_length_313_cov_4.054167_g52123_i0 PRJNA917598 53067 313 4.054167 12.68954271 Toxoplasma gondii 5811 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.75e-4   NTclustered gi|820698945|tpe|LN714498.1| 432359 g52123 i0 100 1.14696485623003 32 0 10 0 268 299 2293489 2293520 TPA_asm: Toxoplasma gondii VEG, chromosome chrVIII, complete genome blastn 359 60.2 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
13649850 13649850 PRJNA917598_P_NODE_51031_length_320_cov_3.113360_g50087_i0 PRJNA917598 51031 320 3.11336 9.962752 Toxoplasma gondii 5811 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.79e-4   NTclustered gi|820698945|tpe|LN714498.1| 432359 g50087 i0 100 1.121875 32 0 10 0 15 46 2293520 2293489 TPA_asm: Toxoplasma gondii VEG, chromosome chrVIII, complete genome blastn 359 60.2 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
18748499 18748499 PRJNA917598_P_NODE_77735_length_255_cov_1.269231_g76791_i0 PRJNA917598 77735 255 1.269231 3.23653905 Eimeria necatrix 51315 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|921126143|ref|XM_013582227.1| 51315 g76791 i0 100 0.109803921568627 28 0 11 0 200 227 606 633 Eimeria necatrix hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;