RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA917598" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA917598 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2172130 2172130 PRJNA917598_P_NODE_72082_length_267_cov_2.902062_g71138_i0 PRJNA917598 72082 267 2.902062 7.74850554 Trebouxia sp. SL0000003 3350044 Plants Plants 261 3.73e-65   NTclustered gi|2917929622|emb|OZ234910.1| 3350044 g71138 i0 85.115 198.928838951311 262 32 97 6 5 264 2247230 2246974 Trebouxia sp. SL0000003 genome assembly, chromosome: 5 blastn 53114 261 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
11098762 11098762 PRJNA917598_P_NODE_11789_length_690_cov_6.471637_g10876_i0 PRJNA917598 11789 690 6.471637 44.6542953 Haematococcus lacustris 44745 Plants Plants 813 0   NTclustered gi|1279575454|gb|MF683078.1| 44745 g10876 i0 88.109 245.430434782609 698 66 100 15 1 690 2910 3598 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 169347 813 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
11100488 11100488 PRJNA917598_P_NODE_81689_length_250_cov_0.870056_g80745_i0 PRJNA917598 81689 250 0.870056 2.17514 Monoraphidium neglectum 145388 Plants Plants 52.8 0.023   NTclustered gi|926792394|ref|XM_014049217.1| 145388 g80745 i0 100 0.112 28 0 11 0 70 97 2182 2155 Monoraphidium neglectum hypothetical protein mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
18748686 18748686 PRJNA917598_P_NODE_8575_length_819_cov_5.987936_g7728_i0 PRJNA917598 8575 819 5.987936 49.04119584 Haematococcus lacustris 44745 Plants Plants 893 0   NTclustered gi|1279575454|gb|MF683078.1| 44745 g7728 i0 86.49 206.080586080586 829 93 100 16 1 819 2910 3729 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 168780 893 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
21298173 21298173 PRJNA917598_P_NODE_48277_length_330_cov_1.342412_g47333_i0 PRJNA917598 48277 330 1.342412 4.4299596 Chlamydomonas sp. ICE-L 309537 Plants Plants 248 3.69e-61   NTclustered gi|311697318|gb|HM748326.1| 309537 g47333 i0 80.952 75.9727272727273 336 44 99 16 5 330 616 941 Chlamydomonas sp. ICE-L S-adenosyl homocysteine hydrolase (LSAH1) mRNA, complete cds blastn 25071 248 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. ICE-L
22574085 22574085 PRJNA917598_P_NODE_84878_length_248_cov_0.880000_g83934_i0 PRJNA917598 84878 248 0.88 2.1824 Chlamydomonas reinhardtii 3055 Plants Plants 132 2.8e-26   NTclustered gi|2082267188|ref|XM_043070972.1| 3055 g83934 i0 79.275 10.4395161290323 193 37 78 2 54 246 131 320 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_16g660150v5), mRNA blastn 2589 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
23848764 23848764 PRJNA917598_P_NODE_61059_length_289_cov_1.328704_g60115_i0 PRJNA917598 61059 289 1.328704 3.83995456 Koliella longiseta 33092 Plants Plants 331 3.07e-86   NTclustered gi|2724824530|gb|PP746562.1| 33092 g60115 i0 87.456 99.4325259515571 287 36 99 0 3 289 47703 47417 Koliella longiseta culture UTEX:339 mitochondrion, complete genome blastn 28736 331 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;