contig_metadata
23 rows where analysis = "blastn", bioproject = "PRJNA917598" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2171065 | 2171065 | PRJNA917598_P_NODE_28222_length_434_cov_1.157895_g27278_i0 | PRJNA917598 | 28222 | 434 | 1.157895 | 5.0252643 | Phycisphaera mikurensis | 547188 | Bacteria | Bacteria | 172 | 3.08e-38 | NTclustered | gi|381385343|dbj|AP012338.1| | 1142394 | g27278 | i0 | 80.417 | 0.682027649769585 | 240 | 36 | 54 | 7 | 55 | 290 | 708823 | 709055 | Phycisphaera mikurensis NBRC 102666 DNA, complete genome | blastn | 296 | 172 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerales | Phycisphaeraceae | Phycisphaera | Phycisphaera mikurensis | |
| 2171326 | 2171326 | PRJNA917598_P_NODE_38362_length_371_cov_0.758389_g37418_i0 | PRJNA917598 | 38362 | 371 | 0.758389 | 2.81362319 | uncultured Phycisphaerales bacterium | 904075 | Bacteria | Bacteria | 460 | 4.95e-125 | NTclustered | gi|2874253847|emb|OY969903.1| | 904075 | g37418 | i0 | 91.228 | 465.929919137466 | 342 | 25 | 91 | 4 | 34 | 370 | 1831257 | 1830916 | MAG: uncultured Phycisphaerales bacterium isolate MFD01213.bin.c.1 genome assembly, chromosome: 1 | blastn | 172860 | 460 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerales | uncultured Phycisphaerales bacterium | |||
| 2171768 | 2171768 | PRJNA917598_P_NODE_56522_length_302_cov_1.672489_g55578_i0 | PRJNA917598 | 56522 | 302 | 1.672489 | 5.05091678 | Phycisphaeraceae bacterium | 2026777 | Bacteria | Bacteria | 366 | 8.84e-97 | NTclustered | gi|2076441902|gb|CP075368.1| | 2026777 | g55578 | i0 | 93.173 | 94.5860927152318 | 249 | 17 | 82 | 0 | 54 | 302 | 2583002 | 2582754 | MAG: Phycisphaeraceae bacterium isolate ACE_PLA2 chromosome | blastn | 28565 | 366 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerales | Phycisphaeraceae | Phycisphaeraceae bacterium | ||
| 4724307 | 4724307 | PRJNA917598_P_NODE_32084_length_406_cov_1.588589_g31140_i0 | PRJNA917598 | 32084 | 406 | 1.588589 | 6.44967134 | Phycisphaeraceae bacterium | 2026777 | Bacteria | Bacteria | 586 | 8.639999999999997e-163 | NTclustered | gi|1927958621|gb|CP054186.1| | 2026777 | g31140 | i0 | 92.647 | 122.495073891626 | 408 | 28 | 100 | 2 | 1 | 406 | 1867230 | 1866823 | MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome | blastn | 49733 | 586 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerales | Phycisphaeraceae | Phycisphaeraceae bacterium | ||
| 6000408 | 6000408 | PRJNA917598_P_NODE_92745_length_243_cov_0.905882_g91801_i0 | PRJNA917598 | 92745 | 243 | 0.905882 | 2.20129326 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 340 | 4.169999999999999e-89 | NTclustered | gi|2874253749|emb|OY969623.1| | 1914239 | g91801 | i0 | 92.593 | 86.3333333333333 | 243 | 9 | 97 | 8 | 4 | 239 | 7051242 | 7051002 | MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 | blastn | 20979 | 340 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 7274082 | 7274082 | PRJNA917598_P_NODE_36166_length_382_cov_0.880259_g35222_i0 | PRJNA917598 | 36166 | 382 | 0.880259 | 3.36258938 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 442 | 1.8499999999999992e-119 | NTclustered | gi|2874253853|emb|OY969909.1| | 1914239 | g35222 | i0 | 88.649 | 142.688481675393 | 370 | 33 | 96 | 8 | 1 | 366 | 2002251 | 2001887 | MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 | blastn | 54507 | 442 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 7629753 | 7629753 | PRJNA917598_P_NODE_79526_length_251_cov_0.865169_g78582_i0 | PRJNA917598 | 79526 | 251 | 0.865169 | 2.17157419 | Planctomycetia | 203683 | Bacteria | Bacteria | 220 | 5.89e-53 | NTclustered | gi|2874253749|emb|OY969623.1| | 1914239 | g78582 | i0 | 88.235 | 89.7529880478088 | 187 | 18 | 74 | 4 | 61 | 245 | 7051659 | 7051475 | MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 | blastn | 22528 | 222 | 0.990990990990991 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 9823606 | 9823606 | PRJNA917598_P_NODE_31108_length_413_cov_1.111765_g30164_i0 | PRJNA917598 | 31108 | 413 | 1.111765 | 4.59158945 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 512 | 1.51e-140 | NTclustered | gi|2874253749|emb|OY969623.1| | 1914239 | g30164 | i0 | 90 | 157.031476997579 | 400 | 34 | 96 | 6 | 18 | 413 | 7051408 | 7051011 | MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 | blastn | 64854 | 512 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 11099543 | 11099543 | PRJNA917598_P_NODE_42809_length_351_cov_1.500000_g41865_i0 | PRJNA917598 | 42809 | 351 | 1.5 | 5.265 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 518 | 2.72e-142 | NTclustered | gi|2874253853|emb|OY969909.1| | 1914239 | g41865 | i0 | 93.429 | 120.336182336182 | 350 | 22 | 99 | 1 | 3 | 351 | 2002652 | 2002303 | MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 | blastn | 42238 | 518 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 13649203 | 13649203 | PRJNA917598_P_NODE_25231_length_460_cov_2.503876_g24288_i0 | PRJNA917598 | 25231 | 460 | 2.503876 | 11.5178296 | uncultured Parachlamydiaceae bacterium | 464461 | Bacteria | Bacteria | 440 | 8.149999999999996e-119 | NTclustered | gi|2874253811|emb|OY969795.1| | 464461 | g24288 | i0 | 86.408 | 91.095652173913 | 412 | 45 | 88 | 11 | 53 | 458 | 657299 | 656893 | MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 | blastn | 41904 | 440 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | uncultured Parachlamydiaceae bacterium | ||
| 14005345 | 14005345 | PRJNA917598_P_NODE_42051_length_354_cov_1.370107_g41107_i0 | PRJNA917598 | 42051 | 354 | 1.370107 | 4.85017878 | Engelhardtia | 139931 | Bacteria | Bacteria | 228 | 5.1799999999999985e-55 | NTclustered | gi|1712638177|gb|CP036287.1| | 2528011 | g41107 | i0 | 85.586 | 87.228813559322 | 222 | 26 | 62 | 6 | 6 | 225 | 5247907 | 5247690 | Planctomycetes bacterium Pla133 chromosome, complete genome | blastn | 30879 | 228 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Engelhardtia | Engelhardtia mirabilis | |||
| 14005392 | 14005392 | PRJNA917598_P_NODE_47211_length_334_cov_1.176245_g46267_i0 | PRJNA917598 | 47211 | 334 | 1.176245 | 3.9286583 | Candidatus Protochlamydia | 282132 | Bacteria | Bacteria | 484 | 2.6199999999999996e-132 | NTclustered | gi|1691252667|emb|BX908798.2| | 264201 | g46267 | i0 | 92.836 | 174.928143712575 | 335 | 23 | 100 | 1 | 1 | 334 | 2154264 | 2153930 | Candidatus Protochlamydia amoebophila UWE25 complete genome | blastn | 58426 | 484 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Candidatus Protochlamydia | Candidatus Protochlamydia amoebophila | |
| 14924100 | 14924100 | PRJNA917598_P_NODE_48172_length_330_cov_2.031128_g47228_i0 | PRJNA917598 | 48172 | 330 | 2.031128 | 6.7027224 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 433 | 9.499999999999999e-117 | NTclustered | gi|2874253853|emb|OY969909.1| | 1914239 | g47228 | i0 | 90.798 | 89.9666666666667 | 326 | 26 | 98 | 3 | 1 | 324 | 2002794 | 2003117 | MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 | blastn | 29689 | 433 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 14924179 | 14924179 | PRJNA917598_P_NODE_51272_length_320_cov_0.935223_g50328_i0 | PRJNA917598 | 51272 | 320 | 0.935223 | 2.9927136 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 278 | 4.55e-70 | NTclustered | gi|2874253749|emb|OY969623.1| | 1914239 | g50328 | i0 | 82.515 | 121.78125 | 326 | 47 | 100 | 8 | 1 | 320 | 7052138 | 7051817 | MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 | blastn | 38970 | 278 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 14924181 | 14924181 | PRJNA917598_P_NODE_51312_length_319_cov_2.504065_g50368_i0 | PRJNA917598 | 51312 | 319 | 2.504065 | 7.98796735 | Phycisphaerales bacterium | 2052180 | Bacteria | Bacteria | 117 | 1.05e-21 | NTclustered | gi|1958061316|gb|CP064987.1| | 2052180 | g50368 | i0 | 79.532 | 0.536050156739812 | 171 | 29 | 53 | 6 | 2 | 170 | 2453295 | 2453129 | Phycisphaerales bacterium isolate Fred_18-Q3-R57-64_MAXAC.330_cln chromosome, complete genome | blastn | 171 | 117 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerales | Phycisphaerales bacterium | |||
| 16199343 | 16199343 | PRJNA917598_P_NODE_59213_length_293_cov_2.077273_g58269_i0 | PRJNA917598 | 59213 | 293 | 2.077273 | 6.08640989 | Verrucomicrobiia bacterium | 2499141 | Bacteria | Bacteria | 294 | 4.09e-75 | NTclustered | gi|2621704341|emb|OY760937.1| | 2499141 | g58269 | i0 | 85.274 | 123.156996587031 | 292 | 36 | 99 | 7 | 1 | 289 | 3989696 | 3989983 | MAG: Verrucomicrobiae bacterium isolate 066a7682-a1ac-48de-8761-1470dc9e5c3e genome assembly, chromosome: 1 | blastn | 36085 | 294 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiia bacterium | ||||
| 18747675 | 18747675 | PRJNA917598_P_NODE_44535_length_344_cov_1.221402_g43591_i0 | PRJNA917598 | 44535 | 344 | 1.221402 | 4.20162288 | Anatilimnocola aggregata | 2528021 | Bacteria | Bacteria | 346 | 1.33e-90 | NTclustered | gi|1712591889|gb|CP036274.1| | 2528021 | g43591 | i0 | 91.304 | 81.046511627907 | 253 | 22 | 74 | 0 | 92 | 344 | 7629652 | 7629904 | Anatilimnocola aggregata strain ETA_A8 chromosome, complete genome | blastn | 27880 | 346 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Pirellulaceae | Anatilimnocola | Anatilimnocola aggregata | |
| 18748014 | 18748014 | PRJNA917598_P_NODE_57115_length_300_cov_1.414097_g56171_i0 | PRJNA917598 | 57115 | 300 | 1.414097 | 4.242291 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 287 | 7.030000000000001e-73 | NTclustered | gi|2874253749|emb|OY969623.1| | 1914239 | g56171 | i0 | 87.451 | 205.396666666667 | 255 | 24 | 84 | 8 | 50 | 300 | 7051405 | 7051155 | MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 | blastn | 61619 | 287 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 20377946 | 20377946 | PRJNA917598_P_NODE_7676_length_868_cov_1.800000_g6860_i0 | PRJNA917598 | 7676 | 868 | 1.8 | 15.624 | Waddlia | 71666 | Bacteria | Bacteria | 761 | 0 | NTclustered | gi|470485904|ref|NR_076723.1| | 71667 | g6860 | i0 | 82.809 | 191.44930875576 | 890 | 116 | 99 | 25 | 2 | 865 | 1842 | 964 | Waddlia chondrophila strain WSU 86-1044 23S ribosomal RNA gene, complete sequence | blastn | 166178 | 761 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Waddliaceae | Waddlia | Waddlia chondrophila | |
| 21298766 | 21298766 | PRJNA917598_P_NODE_72057_length_268_cov_0.846154_g71113_i0 | PRJNA917598 | 72057 | 268 | 0.846154 | 2.26769272 | Pedosphaera parvula | 1032527 | Bacteria | Bacteria | 388 | 1.65e-103 | NTclustered | gi|183579829|emb|AM905426.1| | 320771 | g71113 | i0 | 93.182 | 84.9365671641791 | 264 | 18 | 99 | 0 | 1 | 264 | 941 | 1204 | Bacterium Ellin514 23S rRNA gene, isolate Ellin514 | blastn | 22763 | 388 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Pedosphaerae | Pedosphaerales | Pedosphaeraceae | Pedosphaera | Pedosphaera parvula | |
| 22573339 | 22573339 | PRJNA917598_P_NODE_53498_length_312_cov_1.610879_g52554_i0 | PRJNA917598 | 53498 | 312 | 1.610879 | 5.02594248 | Phycisphaerales bacterium | 2052180 | Bacteria | Bacteria | 355 | 1.99e-93 | NTclustered | gi|1958061316|gb|CP064987.1| | 2052180 | g52554 | i0 | 87.987 | 36.6538461538462 | 308 | 27 | 97 | 8 | 9 | 311 | 2190447 | 2190145 | Phycisphaerales bacterium isolate Fred_18-Q3-R57-64_MAXAC.330_cln chromosome, complete genome | blastn | 11436 | 355 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerales | Phycisphaerales bacterium | |||
| 23848780 | 23848780 | PRJNA917598_P_NODE_61859_length_287_cov_2.228972_g60915_i0 | PRJNA917598 | 61859 | 287 | 2.228972 | 6.39714964 | uncultured Ruficoccus sp. | 2175960 | Bacteria | Bacteria | 279 | 1.12e-70 | NTclustered | gi|2907625921|emb|OZ223481.1| | 2175960 | g60915 | i0 | 85.874 | 105.435540069686 | 269 | 30 | 92 | 7 | 23 | 287 | 741277 | 741013 | MAG: uncultured Ruficoccus sp. isolate b2a3d85c-2e17-47e2-9e32-7ac6437316b9 genome assembly, chromosome: 10 | blastn | 30260 | 279 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Puniceicoccales | Cerasicoccaceae | Ruficoccus | uncultured Ruficoccus sp. | |
| 25121518 | 25121518 | PRJNA917598_P_NODE_19300_length_531_cov_2.460699_g18363_i0 | PRJNA917598 | 19300 | 531 | 2.460699 | 13.06631169 | Phycisphaeraceae bacterium | 2026777 | Bacteria | Bacteria | 665 | 0 | NTclustered | gi|1927958621|gb|CP054186.1| | 2026777 | g18363 | i0 | 89.662 | 147.139359698682 | 532 | 42 | 99 | 11 | 3 | 527 | 1866748 | 1866223 | MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome | blastn | 78131 | 665 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerales | Phycisphaeraceae | Phycisphaeraceae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;