RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA915212" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA915212 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3446056 3446056 PRJNA915212_P_NODE_8943_length_195_cov_0.986301_g8905_i0 PRJNA915212 8943 195 0.986301 1.92328695 Sycon ciliatum 27933 Porifera other_Eukaryota 102 1.65e-17   NTclustered gi|2732940014|ref|XM_065337196.1| 27933 g8905 i0 83.186 3.1948717948718 113 17 57 2 38 149 923 1034 PREDICTED: Sycon ciliatum procathepsin L-like (LOC135824458), mRNA blastn 623 102 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;