RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA915212" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA915212 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11098622 11098622 PRJNA915212_P_NODE_12229_length_166_cov_0.871795_g12191_i0 PRJNA915212 12229 166 0.871795 1.4471797 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 86.1 1.37e-12   NTclustered gi|294904388|ref|XM_002777538.1| 423536 g12191 i0 94.545 0.662650602409639 55 3 33 0 1 55 347 401 Perkinsus marinus ATCC 50983 succinate dehydrogenase, putative, mRNA blastn 110 86.1 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
22572176 22572176 PRJNA915212_P_NODE_10498_length_178_cov_1.186047_g10460_i0 PRJNA915212 10498 178 1.186047 2.11116366 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 130 6.76e-26   NTclustered gi|294936906|ref|XM_002781860.1| 423536 g10460 i0 80 33.7415730337079 175 35 98 0 4 178 265 439 Perkinsus marinus ATCC 50983 translation elongation factor EF-1, subunit alpha,, putative, mRNA blastn 6006 130 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
25121273 25121273 PRJNA915212_P_NODE_8960_length_194_cov_1.758621_g8922_i0 PRJNA915212 8960 194 1.758621 3.41172474 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 154 4.46e-33   NTclustered gi|294953618|ref|XM_002787808.1| 423536 g8922 i0 86.014 4.91237113402062 143 20 74 0 51 193 463 321 Perkinsus marinus ATCC 50983 40S ribosomal protein S14, putative, mRNA blastn 953 154 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;