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contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJNA915212" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 19 ✖

tax_clade 1

bioproject 1

  • PRJNA915212 · 19 ✖

analysis 1

  • blastn · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2170512 2170512 PRJNA915212_P_NODE_1542_length_537_cov_1.213115_g1507_i0 PRJNA915212 1542 537 1.213115 6.51442755 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 222 3.8e-53   NTclustered gi|2795061008|ref|XM_067940276.1| 4785 g1507 i0 82.8 20.8379888268156 250 41 46 2 179 427 181 429 Phytophthora cinnamomi 60S ribosomal protein L23a (IUM83_15460), partial mRNA blastn 11190 222 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
2170546 2170546 PRJNA915212_P_NODE_3782_length_317_cov_0.895522_g3744_i0 PRJNA915212 3782 317 0.895522 2.83880474 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 200 1e-46   NTclustered gi|669157777|ref|XM_008616229.1| 1156394 g3744 i0 80.37 55.4227129337539 270 47 84 6 28 294 227 493 Saprolegnia diclina VS20 60S ribosomal protein L11 mRNA blastn 17569 200 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
2526664 2526664 PRJNA915212_P_NODE_11522_length_168_cov_1.285714_g11484_i0 PRJNA915212 11522 168 1.285714 2.15999952 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 207 2.85e-49   NTclustered gi|156987041|gb|EU080554.1| 53983 g11484 i0 89.157 98.75 166 18 99 0 3 168 1005 840 Phytophthora cambivora isolate PD_00043(P0592) heat shock protein 90 (HSP90) gene, partial cds blastn 16590 209 0.990430622009569 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cambivora
3445987 3445987 PRJNA915212_P_NODE_1683_length_512_cov_2.684665_g1648_i0 PRJNA915212 1683 512 2.684665 13.7454848 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 5.87e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g1648 i0 80.533 66.0703125 375 65 72 4 15 382 68 441 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
3445996 3445996 PRJNA915212_P_NODE_2383_length_425_cov_2.167553_g2347_i0 PRJNA915212 2383 425 2.167553 9.21210025 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 224 8.2e-54   NTclustered gi|673039918|ref|XM_008875698.1| 157072 g2347 i0 77.748 67.8752941176471 373 77 87 6 50 419 58 427 Aphanomyces invadans hypothetical protein mRNA blastn 28847 224 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
3446025 3446025 PRJNA915212_P_NODE_4483_length_286_cov_1.514768_g4445_i0 PRJNA915212 4483 286 1.514768 4.33223648 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 145 4.24e-30   NTclustered gi|695460853|ref|XM_009539792.1| 67593 g4445 i0 84.722 6.30769230769231 144 22 50 0 38 181 237 94 Phytophthora sojae hypothetical protein mRNA blastn 1804 145 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
8548077 8548077 PRJNA915212_P_NODE_187_length_1397_cov_2.293027_g176_i0 PRJNA915212 187 1397 2.293027 32.03358719 Achlya ambisexualis 4768 SAR_Eukaryotes SAR_Eukaryotes 830 0   NTclustered gi|22086552|gb|AF402101.1| 4768 g176 i0 78.448 92.4430923407301 1327 246 94 30 91 1397 1570 264 Achlya ambisexualis isolate JS855 heat shock protein Hsp90 mRNA, complete cds blastn 129143 830 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya ambisexualis
8548119 8548119 PRJNA915212_P_NODE_6467_length_230_cov_1.690608_g6429_i0 PRJNA915212 6467 230 1.6906080000000001 3.8883984 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 222 1.4799999999999999e-53   NTclustered gi|675207712|ref|XM_008914493.1| 761204 g6429 i0 90.476 98.6173913043478 168 16 73 0 3 170 195 28 Phytophthora parasitica INRA-310 hsp70-like protein partial mRNA blastn 22682 222 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
9823003 9823003 PRJNA915212_P_NODE_1408_length_563_cov_2.237354_g1374_i0 PRJNA915212 1408 563 2.237354 12.59630302 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 604 3.399999999999999e-168   NTclustered gi|675199806|ref|XM_008910540.1| 761204 g1374 i0 90.889 79.7744227353464 450 41 80 0 43 492 585 136 Phytophthora parasitica INRA-310 calmodulin mRNA blastn 44913 604 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
9823048 9823048 PRJNA915212_P_NODE_5168_length_262_cov_1.661972_g5130_i0 PRJNA915212 5168 262 1.661972 4.35436664 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 182 2.92e-41   NTclustered gi|669146817|ref|XM_008610749.1| 1156394 g5130 i0 82.381 9.08778625954199 210 35 80 2 3 211 223 431 Saprolegnia diclina VS20 40S ribosomal protein S8 mRNA blastn 2381 182 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
10179624 10179624 PRJNA915212_P_NODE_6428_length_231_cov_1.401099_g6390_i0 PRJNA915212 6428 231 1.401099 3.23653869 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 176 1.17e-39   NTclustered gi|2795034154|ref|XM_067934539.1| 4785 g6390 i0 82.439 57.7489177489177 205 32 88 4 29 231 476 274 Phytophthora cinnamomi GTP-binding nuclear protein ran-1 (IUM83_10055), partial mRNA blastn 13340 176 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
12374300 12374300 PRJNA915212_P_NODE_3710_length_322_cov_1.366300_g3672_i0 PRJNA915212 3710 322 1.3663 4.399486 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 187 7.939999999999998e-43   NTclustered gi|669151349|ref|XM_008613015.1| 1156394 g3672 i0 77.329 31.9285714285714 322 69 99 3 3 322 1158 839 Saprolegnia diclina VS20 adenosylhomocysteinase mRNA blastn 10281 187 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
14005049 14005049 PRJNA915212_P_NODE_151_length_1481_cov_2.247905_g142_i0 PRJNA915212 151 1481 2.247905 33.29147305 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 944 0   NTclustered gi|189084708|gb|BT032224.1| 4784 g142 i0 80.378 81.4996623902768 1269 227 85 17 148 1405 2041 784 Phytophthora capsici clone CBOT153-M08 mRNA sequence blastn 120701 944 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
14923061 14923061 PRJNA915212_P_NODE_132_length_1538_cov_2.656817_g123_i0 PRJNA915212 132 1538 2.656817 40.86184546 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 1090 0   NTclustered gi|38489929|gb|AY456093.1| 4792 g123 i0 80.384 96.2808842652796 1458 266 94 19 89 1536 2360 913 Phytophthora nicotianae heat shock protein 70 (Hsp70a) gene, complete cds blastn 148080 1090 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
16198002 16198002 PRJNA915212_P_NODE_1373_length_572_cov_2.676864_g1341_i0 PRJNA915212 1373 572 2.676864 15.31166208 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 268 5.149999999999999e-67   NTclustered gi|673014017|ref|XM_008862748.1| 157072 g1341 i0 82.132 6.72727272727273 319 51 55 5 130 445 480 165 Aphanomyces invadans archaeal ribosomal protein S17P mRNA blastn 3848 268 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
16198087 16198087 PRJNA915212_P_NODE_8173_length_204_cov_0.987097_g8135_i0 PRJNA915212 8173 204 0.987097 2.01367788 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 119 1.73e-22   NTclustered gi|698810055|ref|XM_009839755.1| 112090 g8135 i0 77.612 1.23039215686275 201 41 98 4 4 202 2166 1968 Aphanomyces astaci transitional endoplasmic reticulum ATPase mRNA blastn 251 119 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
20021800 20021800 PRJNA915212_P_NODE_216_length_1328_cov_2.501173_g204_i0 PRJNA915212 216 1328 2.501173 33.21557744 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 634 1.0599999999999995e-176   NTclustered gi|189083945|gb|BT031461.1| 4784 g204 i0 78.63 53.605421686747 978 193 73 16 359 1328 1740 771 Phytophthora capsici clone CBOT17-D19 mRNA sequence blastn 71188 634 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
21653194 21653194 PRJNA915212_P_NODE_1937_length_476_cov_1.824356_g1902_i0 PRJNA915212 1937 476 1.824356 8.68393456 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 414 5.13e-111   NTclustered gi|673019533|ref|XM_008865506.1| 157072 g1902 i0 84.397 87.5525210084034 423 64 89 2 2 423 136 557 Aphanomyces invadans hypothetical protein mRNA blastn 41675 418 0.990430622009569 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
22572232 22572232 PRJNA915212_P_NODE_5258_length_260_cov_1.194313_g5220_i0 PRJNA915212 5258 260 1.194313 3.1052138 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 156 1.76e-33   NTclustered gi|2795047539|ref|XM_067937834.1| 4785 g5220 i0 79.545 42.9730769230769 220 43 84 2 42 260 459 241 Phytophthora cinnamomi 60S ribosomal protein (IUM83_13175), partial mRNA blastn 11173 156 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;