RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA915212" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA915212 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
895106 895106 PRJNA915212_P_NODE_6481_length_230_cov_1.265193_g6443_i0 PRJNA915212 6481 230 1.265193 2.9099439 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 100 7.23e-17   NTclustered gi|470428251|ref|XM_004338026.1| 1257118 g6443 i0 80.62 0.560869565217391 129 25 56 0 3 131 562 690 Acanthamoeba castellanii str. Neff TolAlike protein (ACA1_224400), partial mRNA blastn 129 100 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
2170501 2170501 PRJNA915212_P_NODE_1282_length_590_cov_2.353050_g1250_i0 PRJNA915212 1282 590 2.35305 13.882995 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 322 4.03e-83   NTclustered gi|470484553|ref|XM_004344028.1| 1257118 g1250 i0 79.866 45.6677966101695 447 84 75 5 1 444 539 96 Acanthamoeba castellanii str. Neff Sadenosyl-L-homocysteine hydrolase, putative (ACA1_054200), partial mRNA blastn 26944 322 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
3446027 3446027 PRJNA915212_P_NODE_4643_length_280_cov_1.103896_g4605_i0 PRJNA915212 4643 280 1.103896 3.0909088 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 159 1.48e-34   NTclustered gi|470439750|ref|XM_004339178.1| 1257118 g4605 i0 80.676 0.739285714285714 207 38 74 2 64 269 408 203 Acanthamoeba castellanii str. Neff GDPassociated inhibitor, putative (ACA1_058790), partial mRNA blastn 207 159 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5998359 5998359 PRJNA915212_P_NODE_1505_length_543_cov_3.042510_g1470_i0 PRJNA915212 1505 543 3.04251 16.5208293 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 243 2.950000000000001e-59   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g1470 i0 81.126 55.5046040515654 302 57 56 0 102 403 422 121 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 30139 243 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8548048 8548048 PRJNA915212_P_NODE_10747_length_175_cov_1.579365_g10709_i0 PRJNA915212 10747 175 1.579365 2.76388875 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 134 5.12e-27   NTclustered gi|470510585|ref|XM_004351497.1| 1257118 g10709 i0 85.714 10.1485714285714 126 18 72 0 2 127 934 809 Acanthamoeba castellanii str. Neff transport protein Sec61 alpha subunit, putative (ACA1_149400), partial mRNA blastn 1776 134 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16553525 16553525 PRJNA915212_P_NODE_1773_length_498_cov_8.632517_g1738_i0 PRJNA915212 1773 498 8.632517 42.98993466 Vannellidae 95227 Discosea other_Eukaryota 725 0   NTclustered gi|62865947|gb|AY929922.1| 325065 g1738 i0 93.426 100.570281124498 502 12 100 16 1 498 1187 1671 Platyamoeba sp. strain CAZ7/I 18S small subunit ribosomal RNA gene, partial sequence blastn 50084 728 0.995879120879121 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba sp. strain CAZ7/I
23847455 23847455 PRJNA915212_P_NODE_8219_length_203_cov_1.545455_g8181_i0 PRJNA915212 8219 203 1.545455 3.13727365 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 226 9.849999999999997e-55   NTclustered gi|927486|emb|X79205.1| 5755 g8181 i0 86.765 87.2610837438424 204 25 100 2 1 203 997 795 A.castellanii mRNA for methionine adenosyltransferase blastn 17714 226 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
25121217 25121217 PRJNA915212_P_NODE_1980_length_471_cov_1.696682_g1945_i0 PRJNA915212 1980 471 1.696682 7.99137222 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 355 3.12e-93   NTclustered gi|470484553|ref|XM_004344028.1| 1257118 g1945 i0 87.066 70.0021231422505 317 37 67 4 120 433 593 908 Acanthamoeba castellanii str. Neff Sadenosyl-L-homocysteine hydrolase, putative (ACA1_054200), partial mRNA blastn 32971 355 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;