contig_metadata
20 rows where analysis = "blastn", bioproject = "PRJNA915212" and tax_phylum = "Actinomycetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 895045 | 895045 | PRJNA915212_P_NODE_12901_length_165_cov_0.879310_g12863_i0 | PRJNA915212 | 12901 | 165 | 0.87931 | 1.4508615 | Actinomadura sp. NAK00032 | 2742128 | Bacteria | Bacteria | 52.8 | 0.014 | NTclustered | gi|1860167784|gb|CP054932.1| | 2742128 | g12863 | i0 | 100 | 0.16969696969697 | 28 | 0 | 17 | 0 | 44 | 71 | 2541788 | 2541761 | Actinomadura sp. NAK00032 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Streptosporangiales | Thermomonosporaceae | Actinomadura | Actinomadura sp. NAK00032 | ||
| 895123 | 895123 | PRJNA915212_P_NODE_8481_length_200_cov_1.013245_g8443_i0 | PRJNA915212 | 8481 | 200 | 1.013245 | 2.02649 | Mycolicibacterium phocaicum | 319706 | Bacteria | Bacteria | 359 | 9.14e-95 | NTclustered | gi|1806463312|dbj|AP022616.1| | 319706 | g8443 | i0 | 99.005 | 172.17 | 201 | 1 | 100 | 1 | 1 | 200 | 418430 | 418630 | Mycolicibacterium phocaicum JCM 15301 DNA, nearly complete genome | blastn | 34434 | 359 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Mycobacteriaceae | Mycolicibacterium | Mycolicibacterium phocaicum | ||
| 2526669 | 2526669 | PRJNA915212_P_NODE_14062_length_163_cov_0.894737_g14024_i0 | PRJNA915212 | 14062 | 163 | 0.894737 | 1.45842131 | Microbacteriaceae | 85023 | Bacteria | Bacteria | 60.2 | 8.12e-5 | NTclustered | gi|2230249747|gb|CP078077.1| | 2851646 | g14024 | i0 | 93.023 | 5.14110429447853 | 43 | 0 | 25 | 3 | 65 | 105 | 528179 | 528138 | Microbacterium galbinum strain SSW1-36 chromosome | blastn | 838 | 60.2 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Microbacterium | Microbacterium galbinum | ||
| 5998347 | 5998347 | PRJNA915212_P_NODE_13005_length_165_cov_0.879310_g12967_i0 | PRJNA915212 | 13005 | 165 | 0.87931 | 1.4508615 | Streptomyces sp. R39 | 3238631 | Bacteria | Bacteria | 93.5 | 8.13e-15 | NTclustered | gi|2783507500|gb|CP163442.1| | 3238631 | g12967 | i0 | 80.833 | 29.5151515151515 | 120 | 21 | 72 | 2 | 3 | 121 | 256120 | 256002 | Streptomyces sp. R39 plasmid unnamed1, complete sequence | blastn | 4870 | 93.5 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces sp. R39 | ||
| 6355116 | 6355116 | PRJNA915212_P_NODE_545_length_901_cov_1.816901_g523_i0 | PRJNA915212 | 545 | 901 | 1.816901 | 16.37027801 | Mycobacteriaceae | 1762 | Bacteria | Bacteria | 1447 | 0 | NTclustered | gi|2118065613|gb|CP084713.1| | 319706 | g523 | i0 | 95.686 | 187.638179800222 | 904 | 31 | 100 | 4 | 1 | 901 | 1312776 | 1313674 | Mycolicibacterium phocaicum strain RL-HY01 chromosome, complete genome | blastn | 169062 | 1447 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Mycobacteriaceae | Mycolicibacterium | Mycolicibacterium phocaicum | ||
| 7273332 | 7273332 | PRJNA915212_P_NODE_13686_length_163_cov_0.894737_g13648_i0 | PRJNA915212 | 13686 | 163 | 0.894737 | 1.45842131 | Mycolicibacterium goodii | 134601 | Bacteria | Bacteria | 261 | 2.07e-65 | NTclustered | gi|2289144095|gb|CP092364.2| | 134601 | g13648 | i0 | 95.706 | 165.263803680982 | 163 | 6 | 100 | 1 | 1 | 163 | 1003765 | 1003926 | Mycolicibacterium goodii strain ATCC 700504 chromosome, complete genome | blastn | 26938 | 261 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Mycobacteriaceae | Mycolicibacterium | Mycolicibacterium goodii | ||
| 8548075 | 8548075 | PRJNA915212_P_NODE_1787_length_497_cov_2.008929_g1752_i0 | PRJNA915212 | 1787 | 497 | 2.008929 | 9.98437713 | Streptomyces virginiae | 1961 | Bacteria | Bacteria | 303 | 1.21e-77 | NTclustered | gi|2687121656|gb|CP145515.1| | 1961 | g1752 | i0 | 78.511 | 80.0603621730382 | 470 | 95 | 94 | 5 | 3 | 469 | 3199931 | 3200397 | Streptomyces virginiae strain THA-960 chromosome, complete genome | blastn | 39790 | 303 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces virginiae | ||
| 9823064 | 9823064 | PRJNA915212_P_NODE_6908_length_222_cov_2.271676_g6870_i0 | PRJNA915212 | 6908 | 222 | 2.271676 | 5.04312072 | Tsukamurella pulmonis | 47312 | Bacteria | Bacteria | 86.1 | 1.94e-12 | NTclustered | gi|2174344570|dbj|AP025457.1| | 47312 | g6870 | i0 | 86.076 | 40.4279279279279 | 79 | 11 | 36 | 0 | 48 | 126 | 1608458 | 1608380 | Tsukamurella pulmonis TP-B0596 DNA, complete genome | blastn | 8975 | 86.1 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Tsukamurellaceae | Tsukamurella | Tsukamurella pulmonis | ||
| 9823083 | 9823083 | PRJNA915212_P_NODE_8988_length_194_cov_1.055172_g8950_i0 | PRJNA915212 | 8988 | 194 | 1.055172 | 2.04703368 | Streptomyces sp. NBC_01276 | 2903808 | Bacteria | Bacteria | 54.7 | 0.005 | NTclustered | gi|2661462342|gb|CP108442.1| | 2903808 | g8950 | i0 | 100 | 0.438144329896907 | 29 | 0 | 15 | 0 | 78 | 106 | 7536489 | 7536461 | Streptomyces sp. NBC_01276 chromosome, complete genome | blastn | 85 | 54.7 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces sp. NBC_01276 | ||
| 10179610 | 10179610 | PRJNA915212_P_NODE_10868_length_174_cov_1.400000_g10830_i0 | PRJNA915212 | 10868 | 174 | 1.4 | 2.436 | Streptomyces | 1883 | Bacteria | Bacteria | 52.8 | 0.015 | NTclustered | gi|2657704044|gb|CP109044.1| | 1944 | g10830 | i0 | 100 | 0.32183908045977 | 28 | 0 | 16 | 0 | 122 | 149 | 3015218 | 3015191 | Streptomyces halstedii strain NBC 00641 chromosome, complete genome | blastn | 56 | 52.8 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces halstedii | ||
| 11098615 | 11098615 | PRJNA915212_P_NODE_11489_length_168_cov_2.117647_g11451_i0 | PRJNA915212 | 11489 | 168 | 2.117647 | 3.55764696 | Rhodococcus opacus | 37919 | Bacteria | Bacteria | 63.9 | 6.52e-6 | NTclustered | gi|2921205402|gb|CP134707.1| | 37919 | g11451 | i0 | 100 | 4.76190476190476 | 34 | 0 | 20 | 0 | 135 | 168 | 3965997 | 3966030 | Rhodococcus opacus strain DSM 43205 chromosome, complete genome | blastn | 800 | 63.9 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Nocardiaceae | Rhodococcus | Rhodococcus opacus | ||
| 12374251 | 12374251 | PRJNA915212_P_NODE_12930_length_165_cov_0.879310_g12892_i0 | PRJNA915212 | 12930 | 165 | 0.87931 | 1.4508615 | Ilumatobacter coccineus | 467094 | Bacteria | Bacteria | 60.2 | 8.25e-5 | NTclustered | gi|464097432|dbj|AP012057.1| | 1313172 | g12892 | i0 | 92.683 | 0.248484848484848 | 41 | 3 | 25 | 0 | 112 | 152 | 692553 | 692513 | Ilumatobacter coccineus YM16-304 DNA, complete genome | blastn | 41 | 60.2 | 1 | Bacteria | Bacillati | Actinomycetota | Acidimicrobiia | Acidimicrobiales | Ilumatobacteraceae | Ilumatobacter | Ilumatobacter coccineus | ||
| 13648768 | 13648768 | PRJNA915212_P_NODE_4491_length_286_cov_1.232068_g4453_i0 | PRJNA915212 | 4491 | 286 | 1.232068 | 3.52371448 | Yimella sp. cx-51 | 2770551 | Bacteria | Bacteria | 122 | 1.99e-23 | NTclustered | gi|2019559805|gb|CP072113.1| | 2770551 | g4453 | i0 | 91.111 | 31.3216783216783 | 90 | 8 | 31 | 0 | 61 | 150 | 2085599 | 2085510 | Yimella sp. cx-51 chromosome, complete genome | blastn | 8958 | 122 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Dermacoccaceae | Yimella | Yimella sp. cx-51 | ||
| 13648777 | 13648777 | PRJNA915212_P_NODE_5471_length_253_cov_2.122549_g5433_i0 | PRJNA915212 | 5471 | 253 | 2.122549 | 5.37004897 | Mycolicibacterium phocaicum | 319706 | Bacteria | Bacteria | 420 | 5.46e-113 | NTclustered | gi|2118065613|gb|CP084713.1| | 319706 | g5433 | i0 | 97.551 | 129.328063241107 | 245 | 6 | 97 | 0 | 9 | 253 | 1312827 | 1312583 | Mycolicibacterium phocaicum strain RL-HY01 chromosome, complete genome | blastn | 32720 | 420 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Mycobacteriaceae | Mycolicibacterium | Mycolicibacterium phocaicum | ||
| 14923105 | 14923105 | PRJNA915212_P_NODE_4052_length_304_cov_2.125490_g4014_i0 | PRJNA915212 | 4052 | 304 | 2.12549 | 6.4614896 | Streptomyces hygroscopicus | 1912 | Bacteria | Bacteria | 54.7 | 0.008 | NTclustered | gi|2697500286|gb|CP146988.1| | 68042 | g4014 | i0 | 100 | 0.1875 | 29 | 0 | 10 | 0 | 224 | 252 | 9087023 | 9087051 | Streptomyces hygroscopicus subsp. hygroscopicus strain DSM 41954 chromosome, complete genome | blastn | 57 | 54.7 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces hygroscopicus | ||
| 15278996 | 15278996 | PRJNA915212_P_NODE_3492_length_335_cov_1.783217_g3455_i0 | PRJNA915212 | 3492 | 335 | 1.783217 | 5.97377695 | Glutamicibacter | 1742989 | Bacteria | Bacteria | 54.7 | 0.009 | NTclustered | gi|1906898532|gb|CP059853.1| | 37929 | g3455 | i0 | 86.538 | 0.952238805970149 | 52 | 4 | 15 | 3 | 71 | 120 | 666778 | 666728 | Glutamicibacter nicotianae strain ZM05 chromosome, complete genome | blastn | 319 | 54.7 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Glutamicibacter | Glutamicibacter nicotianae | ||
| 16197992 | 16197992 | PRJNA915212_P_NODE_11753_length_167_cov_0.864407_g11715_i0 | PRJNA915212 | 11753 | 167 | 0.864407 | 1.44355969 | Microbacterium sp. JZ31 | 1906274 | Bacteria | Bacteria | 52.8 | 0.014 | NTclustered | gi|1972867151|gb|CP017661.1| | 1906274 | g11715 | i0 | 94.118 | 0.203592814371257 | 34 | 2 | 20 | 0 | 107 | 140 | 3083320 | 3083287 | Microbacterium sp. JZ31, complete genome | blastn | 34 | 52.8 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Microbacterium | Microbacterium sp. JZ31 | ||
| 16198032 | 16198032 | PRJNA915212_P_NODE_2533_length_408_cov_2.359331_g2497_i0 | PRJNA915212 | 2533 | 408 | 2.359331 | 9.62607048 | Blastococcus saxobsidens | 138336 | Bacteria | Bacteria | 75 | 8.36e-9 | NTclustered | gi|378781357|emb|FO117623.1| | 1146883 | g2497 | i0 | 92.308 | 0.379901960784314 | 52 | 4 | 13 | 0 | 73 | 124 | 4765870 | 4765921 | Blastococcus saxobsidens DD2 complete genome | blastn | 155 | 75 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Geodermatophilales | Geodermatophilaceae | Blastococcus | Blastococcus saxobsidens | ||
| 16553529 | 16553529 | PRJNA915212_P_NODE_3193_length_354_cov_2.003279_g3156_i0 | PRJNA915212 | 3193 | 354 | 2.003279 | 7.09160766 | Actinomycetes | 1760 | Bacteria | Bacteria | 54.7 | 0.009 | NTclustered | gi|610391492|gb|CP006842.1| | 1404245 | g3156 | i0 | 96.875 | 0.172316384180791 | 32 | 1 | 9 | 0 | 88 | 119 | 1711868 | 1711837 | Corynebacterium glyciniphilum AJ 3170, complete genome | blastn | 61 | 54.7 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Corynebacteriaceae | Corynebacterium | Corynebacterium glyciniphilum | ||
| 17828551 | 17828551 | PRJNA915212_P_NODE_12174_length_166_cov_1.179487_g12136_i0 | PRJNA915212 | 12174 | 166 | 1.179487 | 1.95794842 | Mycobacteriaceae | 1762 | Bacteria | Bacteria | 307 | 2.69e-79 | NTclustered | gi|2118065613|gb|CP084713.1| | 319706 | g12136 | i0 | 100 | 112.530120481928 | 166 | 0 | 100 | 0 | 1 | 166 | 1312468 | 1312303 | Mycolicibacterium phocaicum strain RL-HY01 chromosome, complete genome | blastn | 18680 | 307 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Mycobacteriaceae | Mycolicibacterium | Mycolicibacterium phocaicum |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;