RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA915212" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 11 ✖

bioproject 1

  • PRJNA915212 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4723654 4723654 PRJNA915212_P_NODE_1364_length_574_cov_3.072381_g1332_i0 PRJNA915212 1364 574 3.072381 17.63546694 Chlamydomonas reinhardtii 3055 Plants Plants 267 1.86e-66   NTclustered gi|2082260161|ref|XM_001690941.2| 3055 g1332 i0 83.566 42.4982578397213 286 45 50 2 161 445 265 549 Chlamydomonas reinhardtii ribosomal protein S23 (CHLRE_12g504200v5), mRNA blastn 24394 267 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
5998367 5998367 PRJNA915212_P_NODE_2185_length_445_cov_2.585859_g2149_i0 PRJNA915212 2185 445 2.585859 11.50707255 Chlorella variabilis 554065 Plants Plants 252 3.96e-62   NTclustered gi|552830805|ref|XM_005847928.1| 554065 g2149 i0 84.585 59.761797752809 253 39 57 0 193 445 174 426 Chlorella variabilis hypothetical protein (RACK1) mRNA, complete cds blastn 26594 252 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
8548122 8548122 PRJNA915212_P_NODE_7027_length_221_cov_0.796512_g6989_i0 PRJNA915212 7027 221 0.796512 1.76029152 Chlamydomonas reinhardtii 3055 Plants Plants 119 1.9e-22   NTclustered gi|2082260551|ref|XM_001702928.2| 3055 g6989 i0 80.38 1.73755656108597 158 29 71 2 1 157 315 159 Chlamydomonas reinhardtii ribosomal protein S11 (CHLRE_12g514500v5), mRNA blastn 384 119 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
9823022 9823022 PRJNA915212_P_NODE_2468_length_416_cov_1.482289_g2432_i0 PRJNA915212 2468 416 1.482289 6.16632224 Chlorella variabilis 554065 Plants Plants 361 5.8499999999999996e-95   NTclustered gi|552844675|ref|XM_005851082.1| 554065 g2432 i0 84.573 83.2860576923077 363 56 87 0 1 363 448 86 Chlorella variabilis alpha-tubulin (CHLNCDRAFT_33793) mRNA, complete cds blastn 34647 361 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
12374265 12374265 PRJNA915212_P_NODE_1570_length_530_cov_1.985447_g1535_i0 PRJNA915212 1570 530 1.985447 10.5228691 Auxenochlorella protothecoides 3075 Plants Plants 244 8.000000000000002e-60   NTclustered gi|760441128|ref|XM_011399331.1| 3075 g1535 i0 78.358 11.8245283018868 402 69 75 10 100 495 55 444 Auxenochlorella protothecoides 40S ribosomal protein S3-3 partial mRNA blastn 6267 244 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
14923049 14923049 PRJNA915212_P_NODE_10872_length_174_cov_1.320000_g10834_i0 PRJNA915212 10872 174 1.32 2.2968 Volvox carteri 3067 Plants Plants 58.4 3.15e-4   NTclustered gi|302845532|ref|XM_002954259.1| 3068 g10834 i0 100 0.17816091954023 31 0 18 0 19 49 911 881 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_106323), partial mRNA blastn 31 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
14923127 14923127 PRJNA915212_P_NODE_612_length_847_cov_2.330827_g588_i0 PRJNA915212 612 847 2.330827 19.74210469 Chlamydomonas reinhardtii 3055 Plants Plants 885 0   NTclustered gi|2082244282|ref|XM_001703058.2| 3055 g588 i0 87.039 93.1770956316411 787 99 93 3 1 785 1346 561 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_04g216850v5), mRNA blastn 78921 885 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
15278991 15278991 PRJNA915212_P_NODE_14012_length_163_cov_0.894737_g13974_i0 PRJNA915212 14012 163 0.894737 1.45842131 root 1 Root_unresolved Root_unresolved 302 1.22e-77   NTclustered gi|1714003650|gb|MN243923.1| 3079 g13974 i0 100 100.233128834356 163 0 100 0 1 163 842 680 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 16338 302 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
17828562 17828562 PRJNA915212_P_NODE_4934_length_269_cov_1.954545_g4896_i0 PRJNA915212 4934 269 1.954545 5.25772605 Chlorophyceae 3166 Plants Plants 231 2.95e-56   NTclustered gi|2082260161|ref|XM_001690941.2| 3055 g4896 i0 82.759 60.4609665427509 261 43 97 2 1 260 395 136 Chlamydomonas reinhardtii ribosomal protein S23 (CHLRE_12g504200v5), mRNA blastn 16264 231 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
20021826 20021826 PRJNA915212_P_NODE_3676_length_324_cov_3.400000_g3638_i0 PRJNA915212 3676 324 3.4 11.016 Chlorella variabilis 554065 Plants Plants 152 2.9199999999999996e-32   NTclustered gi|552847345|ref|XM_005851779.1| 554065 g3638 i0 78.279 4.6882716049382704 244 47 74 6 47 287 525 285 Chlorella variabilis hypothetical protein (CHLNCDRAFT_133342) mRNA, complete cds blastn 1519 152 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
22928705 22928705 PRJNA915212_P_NODE_3898_length_311_cov_1.675573_g3860_i0 PRJNA915212 3898 311 1.675573 5.21103203 Eukaryota 2759 Plants Plants 239 2.08e-58   NTclustered gi|552833068|ref|XM_005848413.1| 554065 g3860 i0 85.59 81.0932475884244 229 31 73 2 66 293 544 771 Chlorella variabilis hypothetical protein (CHLNCDRAFT_35106) mRNA, complete cds blastn 25220 241 0.991701244813278 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;