RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA915212" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA915212 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
895127 895127 PRJNA915212_P_NODE_9521_length_188_cov_1.467626_g9483_i0 PRJNA915212 9521 188 1.467626 2.75913688 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 161 2.57e-35   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g9483 i0 84.024 68.8085106382979 169 25 89 2 19 186 3051668 3051835 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 12936 161 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
11098635 11098635 PRJNA915212_P_NODE_14289_length_162_cov_0.902655_g14251_i0 PRJNA915212 14289 162 0.902655 1.4623011 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 158 2.78e-34   NTclustered gi|2076441902|gb|CP075368.1| 2026777 g14251 i0 85.43 3.58024691358025 151 22 93 0 1 151 2178731 2178581 MAG: Phycisphaeraceae bacterium isolate ACE_PLA2 chromosome blastn 580 158 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;