RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA915212" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA915212 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5079321 5079321 PRJNA915212_P_NODE_3044_length_365_cov_2.117089_g3007_i0 PRJNA915212 3044 365 2.117089 7.72737485 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 265 4.09e-66   NTclustered gi|551555198|ref|XM_005764739.1| 280463 g3007 i0 81.006 69.4465753424657 358 47 94 14 5 347 640 991 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 25348 265 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
14923119 14923119 PRJNA915212_P_NODE_5172_length_262_cov_1.553991_g5134_i0 PRJNA915212 5172 262 1.553991 4.07145642 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 255 1.7e-63   NTclustered gi|551548842|ref|XM_005762007.1| 280463 g5134 i0 86.9 7.16793893129771 229 28 87 2 22 249 175 402 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 1878 255 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
22572228 22572228 PRJNA915212_P_NODE_4878_length_271_cov_1.959459_g4840_i0 PRJNA915212 4878 271 1.959459 5.31013389 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 195 3.9e-45   NTclustered gi|551548842|ref|XM_005762007.1| 280463 g4840 i0 89.542 6.7380073800738 153 16 56 0 117 269 402 250 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 1826 195 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;