RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA915212" and tax_clade = "Apusozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA915212 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2170554 2170554 PRJNA915212_P_NODE_4202_length_297_cov_1.596774_g4164_i0 PRJNA915212 4202 297 1.596774 4.74241878 Thecamonas trahens 529818 Root_unresolved Root_unresolved 171 7.299999999999999e-38   NTclustered gi|923133140|ref|XM_013904582.1| 461836 g4164 i0 85.366 58.8518518518519 164 24 55 0 16 179 164 1 Thecamonas trahens ATCC 50062 Ras-like protein rasG (AMSG_03185), partial mRNA blastn 17479 171 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
3446038 3446038 PRJNA915212_P_NODE_5983_length_241_cov_1.328125_g5945_i0 PRJNA915212 5983 241 1.328125 3.20078125 Thecamonas trahens 529818 Root_unresolved Root_unresolved 137 5.82e-28   NTclustered gi|923137764|ref|XM_013906893.1| 461836 g5945 i0 79.897 0.804979253112033 194 33 79 6 51 241 7 197 Thecamonas trahens ATCC 50062 40S ribosomal protein SA (AMSG_00611), partial mRNA blastn 194 137 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
5998417 5998417 PRJNA915212_P_NODE_7685_length_211_cov_0.901235_g7647_i0 PRJNA915212 7685 211 0.901235 1.90160585 Thecamonas trahens 529818 Root_unresolved Root_unresolved 58.4 3.98e-4   NTclustered gi|923136453|ref|XM_013906238.1| 461836 g7647 i0 79.31 0.412322274881517 87 14 40 4 1 85 238 322 Thecamonas trahens ATCC 50062 50S ribosomal protein L36e (AMSG_01644), partial mRNA blastn 87 58.4 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
7273384 7273384 PRJNA915212_P_NODE_446_length_990_cov_3.676939_g428_i0 PRJNA915212 446 990 3.676939 36.4016961 Thecamonas trahens 529818 Root_unresolved Root_unresolved 414 1.1099999999999999e-110   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g428 i0 76.671 19.7333333333333 823 146 81 33 124 923 198 997 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 19536 414 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;