RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA914897" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA914897 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17473195 17473195 PRJNA914897_P_NODE_41294_length_243_cov_0.905882_g40870_i0 PRJNA914897 41294 243 0.905882 2.20129326 Desulfovibrio sp. 86 2666132 Bacteria Bacteria 424 4.03e-114   NTclustered gi|1862956133|emb|LR738849.1| 2666132 g40870 i0 98.34 0.991769547325103 241 4 99 0 3 243 1003169 1002929 Desulfovibrio sp. 86 genome assembly, chromosome: DESU86 blastn 241 424 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. 86
23847186 23847186 PRJNA914897_P_NODE_30759_length_284_cov_1.431280_g30335_i0 PRJNA914897 30759 284 1.43128 4.0648352 Caldimicrobium thiodismutans 1653476 Bacteria Bacteria 52.8 0.026   NTclustered gi|972621738|dbj|AP014945.1| 1653476 g30335 i0 96.774 0.109154929577465 31 1 11 0 65 95 486875 486905 Caldimicrobium thiodismutans DNA, complete genome blastn 31 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Caldimicrobium Caldimicrobium thiodismutans
25121142 25121142 PRJNA914897_P_NODE_80_length_3451_cov_6.974245_g70_i0 PRJNA914897 80 3451 6.974245 240.68119495 Pseudodesulfovibrio piezophilus 879567 Bacteria Bacteria 69.4 3.57e-6   NTclustered gi|451894361|emb|FO203427.1| 1322246 g70 i0 78.992 0.794262532599247 119 11 3 10 3285 3393 2361904 2362018 Desulfovibrio piezophilus C1TLV30 complete genome blastn 2741 69.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio piezophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;