RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA914897" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA914897 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16553461 16553461 PRJNA914897_P_NODE_26033_length_318_cov_1.424490_g25609_i0 PRJNA914897 26033 318 1.42449 4.5298782 Entomospira 2834378 Bacteria Bacteria 577 3.9799999999999996e-160   NTclustered gi|2446641004|gb|CP118168.1| 2719987 g25609 i0 99.371 238.380503144654 318 2 100 0 1 318 324809 324492 Entomospira nematocerorum strain BR208 chromosome blastn 75805 582 0.991408934707904 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Entomospira Entomospira nematocerorum
20021508 20021508 PRJNA914897_P_NODE_23376_length_341_cov_2.261194_g22952_i0 PRJNA914897 23376 341 2.261194 7.71067154 Entomospira entomophila 2719988 Bacteria Bacteria 503 7.4e-138   NTclustered gi|2446642546|gb|CP118174.1| 2719988 g22952 i0 93.255 110.680351906158 341 23 100 0 1 341 286985 287325 Entomospira entomophila strain BR193 chromosome blastn 37742 503 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Entomospira Entomospira entomophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;