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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA914897" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA914897 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2170413 2170413 PRJNA914897_P_NODE_41562_length_243_cov_0.905882_g41138_i0 PRJNA914897 41562 243 0.905882 2.20129326 Caenorhabditis elegans 6239 Nematoda Nematoda 449 6.65e-122   NTclustered gi|1972264789|ref|NM_066171.10| 6239 g41138 i0 100 56.4197530864198 243 0 100 0 1 243 426 184 Caenorhabditis elegans Small ribosomal subunit protein uS11 (rps-14), mRNA blastn 13710 449 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
11098454 11098454 PRJNA914897_P_NODE_34629_length_261_cov_1.638298_g34205_i0 PRJNA914897 34629 261 1.638298 4.27595778 Pristionchus pauli 376545 Nematoda Nematoda 139 1.78e-28   NTclustered gi|150982019|gb|EF634598.1| 376545 g34205 i0 81.111 1.58620689655172 180 28 68 6 23 199 213 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 414 139 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
16197648 16197648 PRJNA914897_P_NODE_11753_length_538_cov_1.815054_g11333_i0 PRJNA914897 11753 538 1.815054 9.76499052 Strongyloides ratti 34506 Nematoda Nematoda 169 5.0299999999999995e-37   NTclustered gi|1376143741|ref|XM_024652282.1| 34506 g11333 i0 76.803 4.59293680297398 319 62 58 11 1 313 887 575 Strongyloides ratti Serine/threonine-protein phosphatase PP1-beta catalytic subunit (SRAE_2000134100), partial mRNA blastn 2471 169 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
20021479 20021479 PRJNA914897_P_NODE_1916_length_1357_cov_2.165109_g1734_i0 PRJNA914897 1916 1357 2.165109 29.38052913 Strongyloides ratti 34506 Nematoda Nematoda 67.6 4.96e-6   NTclustered gi|1376154429|ref|XM_024648508.1| 34506 g1734 i0 72.157 0.187914517317612 255 59 18 12 65 313 1256 1008 Strongyloides ratti Dihydropyrimidinase-related protein 2 (SRAE_X000139900), partial mRNA blastn 255 67.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
25120863 25120863 PRJNA914897_P_NODE_1160_length_1592_cov_2.990125_g1032_i0 PRJNA914897 1160 1592 2.990125 47.60279 Strongyloides ratti 34506 Nematoda Nematoda 71.3 4.52e-7   NTclustered gi|1376134321|ref|XM_024647115.1| 34506 g1032 i0 84.507 0.215452261306533 71 11 4 0 799 869 325 395 Strongyloides ratti Serine/threonine-protein phosphatase PP1-beta catalytic subunit (SRAE_1000030000), partial mRNA blastn 343 71.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
25120951 25120951 PRJNA914897_P_NODE_26720_length_312_cov_1.794979_g26296_i0 PRJNA914897 26720 312 1.794979 5.60033448 Diplogastrellus gracilis 669117 Nematoda Nematoda 211 4.55e-50   NTclustered gi|256709130|gb|GQ422217.1| 669117 g26296 i0 79.801 80.1121794871795 302 51 95 8 8 304 427 723 Diplogastrellus gracilis large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 24995 211 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus gracilis
25121023 25121023 PRJNA914897_P_NODE_36280_length_252_cov_1.290503_g35856_i0 PRJNA914897 36280 252 1.290503 3.25206756 Caenorhabditis remanei 31234 Nematoda Nematoda 54.7 0.006   NTclustered gi|2445372991|ref|XM_003107690.2| 31234 g35856 i0 100 0.115079365079365 29 0 12 0 65 93 166 194 Caenorhabditis remanei uncharacterized protein (GCK72_013861), partial mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
25121133 25121133 PRJNA914897_P_NODE_6240_length_792_cov_2.952712_g5870_i0 PRJNA914897 6240 792 2.952712 23.38547904 Strongyloides ratti 34506 Nematoda Nematoda 78.7 1.31e-9   NTclustered gi|1376149593|ref|XM_024643132.1| 34506 g5870 i0 82.105 0.482323232323232 95 14 12 3 306 398 598 505 Strongyloides ratti Vacuolar protein sorting-associated protein 26B (SRAE_2000428100), partial mRNA blastn 382 78.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;