RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA914897" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 11 ✖

bioproject 1

  • PRJNA914897 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
894804 894804 PRJNA914897_P_NODE_27801_length_304_cov_1.519481_g27377_i0 PRJNA914897 27801 304 1.519481 4.61922224 Monoraphidium neglectum 145388 Plants Plants 244 4.35e-60   NTclustered gi|926776527|ref|XM_014041284.1| 145388 g27377 i0 84.127 4.92763157894737 252 40 83 0 53 304 23 274 Monoraphidium neglectum hypothetical protein mRNA blastn 1498 244 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
894988 894988 PRJNA914897_P_NODE_9001_length_637_cov_1.453901_g8588_i0 PRJNA914897 9001 637 1.453901 9.26134937 Chlamydomonas sp. ICE-L 309537 Plants Plants 99 8.01e-16   NTclustered gi|1433048025|gb|MF780879.1| 309537 g8588 i0 82.051 2.67503924646782 117 19 18 2 425 540 1529 1414 Chlamydomonas sp. ICE-L heat shock protein 70C (HSP70C) mRNA, partial cds blastn 1704 99 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. ICE-L
4723604 4723604 PRJNA914897_P_NODE_9324_length_625_cov_1.315217_g8909_i0 PRJNA914897 9324 625 1.315217 8.22010625 Chlamydomonas incerta 51695 Plants Plants 285 5.619999999999999e-72   NTclustered gi|74272614|gb|DQ122872.1| 51695 g8909 i0 77.344 6.5328 512 96 79 15 128 623 960 453 Chlamydomonas incerta mitochondrial ADP/ATP translocator (ANT) mRNA, complete cds; nuclear gene for mitochondrial product blastn 4083 285 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
5998236 5998236 PRJNA914897_P_NODE_39645_length_246_cov_0.890173_g39221_i0 PRJNA914897 39645 246 0.890173 2.18982558 Auxenochlorella protothecoides 3075 Plants Plants 163 9.84e-36   NTclustered gi|760437194|ref|XM_011397364.1| 3075 g39221 i0 79.498 7.09349593495935 239 42 96 5 9 245 175 408 Auxenochlorella protothecoides 40S ribosomal protein S3a partial mRNA blastn 1745 163 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
8903832 8903832 PRJNA914897_P_NODE_31287_length_281_cov_1.413462_g30863_i0 PRJNA914897 31287 281 1.413462 3.97182822 Trebouxiophyceae 75966 Plants Plants 520 5.909999999999999e-143   NTclustered gi|723456786|ref|NC_025525.1| 3171 g30863 i0 100 106.537366548043 281 0 100 0 1 281 4442 4722 Myrmecia israelensis culture-collection UTEX:1181 chloroplast, complete genome blastn 29937 520 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis
12374039 12374039 PRJNA914897_P_NODE_28550_length_298_cov_1.368889_g28126_i0 PRJNA914897 28550 298 1.368889 4.07928922 Helicosporidium sp. ex Simulium jonesi 145475 Plants Plants 113 1.25e-20   NTclustered gi|54399515|gb|AY729488.1| 145475 g28126 i0 80.405 0.496644295302013 148 29 50 0 10 157 1277 1424 Helicosporidium sp. ex Simulium jonesii EF-1 alpha-like protein (efl) mRNA, complete cds blastn 148 113 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Helicosporidium Helicosporidium sp. ex Simulium jonesi
14922930 14922930 PRJNA914897_P_NODE_39192_length_247_cov_0.885057_g38768_i0 PRJNA914897 39192 247 0.885057 2.18609079 Chlamydomonas reinhardtii 3055 Plants Plants 248 2.65e-61   NTclustered gi|2082259086|ref|XM_001697336.2| 3055 g38768 i0 86.344 89.7935222672065 227 31 92 0 6 232 284 510 Chlamydomonas reinhardtii ribosomal protein S14 (CHLRE_11g480150v5), mRNA blastn 22179 248 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
17473153 17473153 PRJNA914897_P_NODE_37314_length_250_cov_0.870056_g36890_i0 PRJNA914897 37314 250 0.870056 2.17514 Chlorella variabilis 554065 Plants Plants 320 5.62e-83   NTclustered gi|552844675|ref|XM_005851082.1| 554065 g36890 i0 89.919 97.452 248 25 99 0 3 250 338 91 Chlorella variabilis alpha-tubulin (CHLNCDRAFT_33793) mRNA, complete cds blastn 24363 320 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
17473167 17473167 PRJNA914897_P_NODE_38814_length_247_cov_1.327586_g38390_i0 PRJNA914897 38814 247 1.327586 3.27913742 Chlamydomonas reinhardtii 3055 Plants Plants 148 2.77e-31   NTclustered gi|2082259988|ref|XM_001690973.2| 3055 g38390 i0 89.076 5.25506072874494 119 13 48 0 126 244 1741 1859 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g508150v5), mRNA blastn 1298 148 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
18746603 18746603 PRJNA914897_P_NODE_40495_length_244_cov_2.935673_g40071_i0 PRJNA914897 40495 244 2.935673 7.16304212 Parachlorella kessleri 3074 Plants Plants 80.5 1.01e-10   NTclustered gi|319904013|gb|HQ336963.1| 3074 g40071 i0 81.373 3.28688524590164 102 15 41 4 1 100 220 121 Parachlorella kessleri strain 211-11g histone H3 mRNA, partial cds blastn 802 80.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Parachlorella Parachlorella kessleri
25120947 25120947 PRJNA914897_P_NODE_25520_length_322_cov_1.783133_g25096_i0 PRJNA914897 25520 322 1.783133 5.74168826 Polytomella parva 51329 Plants Plants 259 1.66e-64   NTclustered gi|1861356253|gb|MT377354.1| 51329 g25096 i0 82.759 82.0031055900621 290 50 90 0 11 300 167 456 Polytomella parva clone 0016300227 component of cytosolic 80S ribosome and 60S large subunit (RPL12) mRNA, complete cds; plastid blastn 26405 259 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella parva

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;