RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA911178" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA911178 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3802007 3802007 PRJNA911178_P_NODE_209923_length_266_cov_1.839378_g207449_i0 PRJNA911178 209923 266 1.839378 4.89274548 Vermamoeba 1260114 Tubulinea other_Eukaryota 470 5.669999999999999e-128   NTclustered gi|2806326577|gb|PQ345827.1| 5778 g207449 i0 100 95.4887218045113 254 0 95 0 1 254 370 117 Vermamoeba vermiformis isolate 8FSa small subunit ribosomal RNA gene, partial sequence blastn 25400 470 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5995793 5995793 PRJNA911178_P_NODE_254905_length_248_cov_1.348571_g252431_i0 PRJNA911178 254905 248 1.348571 3.34445608 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 446 8.81e-121   NTclustered gi|300078496|gb|GU001158.1| 5778 g252431 i0 100 1.94354838709677 241 0 97 0 2 242 3658 3418 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 482 446 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5996424 5996424 PRJNA911178_P_NODE_48265_length_497_cov_5.877358_g45837_i0 PRJNA911178 48265 497 5.877358 29.21046926 Saccamoeba limax 136464 Tubulinea other_Eukaryota 867 0   NTclustered gi|213950421|gb|EU869301.1| 136464 g45837 i0 98.384 59.6861167002012 495 5 99 1 6 497 790 1284 Saccamoeba limax strain NTSHR small subunit ribosomal RNA gene, partial sequence blastn 29664 867 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
7627883 7627883 PRJNA911178_P_NODE_167806_length_290_cov_1.562212_g165333_i0 PRJNA911178 167806 290 1.562212 4.5304148 Tubulinea 555369 Tubulinea other_Eukaryota 525 1.32e-144   NTclustered gi|891071998|gb|KT266863.1| 5778 g165333 i0 99.652 98.7206896551724 287 1 99 0 4 290 12 298 Vermamoeba vermiformis isolate TW EDP 1 18S ribosomal RNA gene, partial sequence blastn 28629 525 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9821353 9821353 PRJNA911178_P_NODE_76148_length_405_cov_11.307229_g73685_i0 PRJNA911178 76148 405 11.307229 45.79427745 Saccamoeba limax 136464 Tubulinea other_Eukaryota 734 0   NTclustered gi|213950421|gb|EU869301.1| 136464 g73685 i0 99.75 51.2 400 1 99 0 6 405 19 418 Saccamoeba limax strain NTSHR small subunit ribosomal RNA gene, partial sequence blastn 20736 734 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
11096927 11096927 PRJNA911178_P_NODE_72549_length_414_cov_4.439883_g70086_i0 PRJNA911178 72549 414 4.439883 18.38111562 Saccamoeba limax 136464 Tubulinea other_Eukaryota 739 0   NTclustered gi|213950421|gb|EU869301.1| 136464 g70086 i0 99.752 65.2222222222222 403 1 97 0 1 403 1894 1492 Saccamoeba limax strain NTSHR small subunit ribosomal RNA gene, partial sequence blastn 27002 739 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
11453613 11453613 PRJNA911178_P_NODE_191069_length_276_cov_5.049261_g188596_i0 PRJNA911178 191069 276 5.0492610000000004 13.93596036 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 508 1.2499999999999999e-139   NTclustered gi|300078496|gb|GU001158.1| 5778 g188596 i0 100 38.3768115942029 275 0 99 0 1 275 1229 955 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10592 508 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12371567 12371567 PRJNA911178_P_NODE_248790_length_249_cov_2.164773_g246316_i0 PRJNA911178 248790 249 2.164773 5.39028477 Flabellula sp. GAU17 2058849 Tubulinea other_Eukaryota 298 2.62e-76   NTclustered gi|1475408427|dbj|LC340987.1| 2058849 g246316 i0 88.889 94.7590361445783 243 25 97 2 8 249 171 412 Flabellula sp. GAU17 gene for actin, partial cds, clone: 4 blastn 23595 298 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Flabellula Flabellula sp. GAU17
23844418 23844418 PRJNA911178_P_NODE_209419_length_266_cov_2.989637_g206945_i0 PRJNA911178 209419 266 2.989637 7.95243442 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 475 1.2199999999999997e-129   NTclustered gi|300078496|gb|GU001158.1| 5778 g206945 i0 100 90.2218045112782 257 0 97 0 10 266 2243 2499 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23999 475 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;