RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA911178" and tax_phylum = "Thermoproteota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA911178 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2168289 2168289 PRJNA911178_P_NODE_294442_length_241_cov_0.916667_g291968_i0 PRJNA911178 294442 241 0.916667 2.20916747 uncultured crenarchaeote 29281 Archaea Archaea 117 7.58e-22   NTclustered gi|82697915|gb|DQ284448.1| 29281 g291968 i0 85 2.05394190871369 120 13 48 5 15 130 740 858 Uncultured crenarchaeote clone MDArch077 putative OB-fold nucleic acid binding protein, putative SpoU-like RNA methylase, and putative conserved protein genes, complete cds blastn 495 117 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
3443379 3443379 PRJNA911178_P_NODE_249603_length_249_cov_1.585227_g247129_i0 PRJNA911178 249603 249 1.585227 3.94721523 uncultured crenarchaeote 29d5 684057 Archaea Archaea 248 2.68e-61   NTclustered gi|262089226|gb|GU059106.1| 684057 g247129 i0 85.477 0.967871485943775 241 31 96 4 10 249 13998 14235 Uncultured crenarchaeote 29d5 genomic sequence blastn 241 248 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote 29d5
13645533 13645533 PRJNA911178_P_NODE_178431_length_284_cov_1.322275_g175958_i0 PRJNA911178 178431 284 1.322275 3.755261 uncultured crenarchaeote 29281 Archaea Archaea 516 7.74e-142   NTclustered gi|18087452|gb|AF458646.1| 29281 g175958 i0 100 98.2535211267606 279 0 98 0 6 284 149 427 Uncultured crenarchaeote 12_02a 16S ribosomal RNA gene, partial sequence blastn 27904 516 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
16194630 16194630 PRJNA911178_P_NODE_167693_length_290_cov_1.746544_g165220_i0 PRJNA911178 167693 290 1.746544 5.0649776 uncultured crenarchaeote 29d5 684057 Archaea Archaea 313 1.12e-80   NTclustered gi|262089226|gb|GU059106.1| 684057 g165220 i0 86.572 1.9586206896551701 283 38 98 0 6 288 13106 12824 Uncultured crenarchaeote 29d5 genomic sequence blastn 568 313 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote 29d5
25118160 25118160 PRJNA911178_P_NODE_196920_length_273_cov_2.195000_g194447_i0 PRJNA911178 196920 273 2.195 5.99235 Acidianus sulfidivorans 312539 Archaea Archaea 54.7 0.007   NTclustered gi|1820310478|gb|CP029288.2| 619593 g194447 i0 100 0.106227106227106 29 0 11 0 218 246 2073007 2072979 Acidianus sulfidivorans JP7 chromosome, complete genome blastn 29 54.7 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Acidianus Acidianus sulfidivorans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;