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contig_metadata

33 rows where analysis = "blastn", bioproject = "PRJNA911178" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 33 ✖

tax_clade 1

bioproject 1

  • PRJNA911178 · 33 ✖

analysis 1

  • blastn · 33 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
891818 891818 PRJNA911178_P_NODE_172721_length_287_cov_1.766355_g170248_i0 PRJNA911178 172721 287 1.766355 5.06943885 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 488 1.7099999999999998e-133   NTclustered gi|575498660|gb|KF853245.1| 65357 g170248 i0 97.88 98.7421602787456 283 5 99 1 5 287 603 884 Albugo candida strain ACCS 18S ribosomal RNA gene, partial sequence blastn 28339 488 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
2168938 2168938 PRJNA911178_P_NODE_88982_length_379_cov_3.238562_g86512_i0 PRJNA911178 88982 379 3.238562 12.27414998 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 172 2.66e-38   NTclustered gi|2795041697|ref|XM_067930728.1| 4785 g86512 i0 86.061 20.6121372031662 165 17 43 4 144 305 186 25 Phytophthora cinnamomi 60S ribosomal protein L27a (IUM83_06510), partial mRNA blastn 7812 172 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
3443101 3443101 PRJNA911178_P_NODE_217623_length_262_cov_1.597884_g215149_i0 PRJNA911178 217623 262 1.597884 4.18645608 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 191 4.86e-44   NTclustered gi|698785786|ref|XM_009827635.1| 112090 g215149 i0 85.326 73.6335877862595 184 27 70 0 3 186 149 332 Aphanomyces astaci histone H4 mRNA blastn 19292 191 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
3801591 3801591 PRJNA911178_P_NODE_130123_length_324_cov_0.812749_g127651_i0 PRJNA911178 130123 324 0.812749 2.63330676 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 316 9.769999999999999e-82   NTclustered gi|38489929|gb|AY456093.1| 4792 g127651 i0 84.472 95.5061728395062 322 48 99 2 4 324 807 1127 Phytophthora nicotianae heat shock protein 70 (Hsp70a) gene, complete cds blastn 30944 316 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
4720455 4720455 PRJNA911178_P_NODE_181384_length_282_cov_1.473684_g178911_i0 PRJNA911178 181384 282 1.473684 4.15578888 Plasmopara viticola 143451 SAR_Eukaryotes SAR_Eukaryotes 510 3.57e-140   NTclustered gi|126565763|gb|EF426546.1| 143451 g178911 i0 100 94.468085106383 276 0 98 0 7 282 492 767 Plasmopara viticola strain UASWS SG1 28S ribosomal RNA gene, complete sequence blastn 26640 510 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara viticola
4722094 4722094 PRJNA911178_P_NODE_83644_length_389_cov_3.566456_g81177_i0 PRJNA911178 83644 389 3.566456 13.87351384 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 294 5.59e-75   NTclustered gi|2289|emb|X59936.1| 4766 g81177 i0 87.451 63.9023136246787 255 32 66 0 1 255 255 1 A.bisexualis gene for actin blastn 24858 294 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
5078226 5078226 PRJNA911178_P_NODE_208744_length_267_cov_1.381443_g206270_i0 PRJNA911178 208744 267 1.381443 3.68845281 Pseudoperonospora 143452 SAR_Eukaryotes SAR_Eukaryotes 486 5.6499999999999985e-133   NTclustered gi|23306513|gb|AY035496.1| 143453 g206270 i0 100 98.501872659176 263 0 99 0 1 263 538 276 Pseudoperonospora cubensis isolate HV 221h large subunit ribosomal RNA gene, partial sequence blastn 26300 486 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora cubensis
6353935 6353935 PRJNA911178_P_NODE_196465_length_273_cov_11.880000_g193992_i0 PRJNA911178 196465 273 11.88 32.4324 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 473 4.51e-129   NTclustered gi|298569933|gb|GQ866983.1| 4788 g193992 i0 98.507 97.8644688644689 268 4 98 0 1 268 542 275 Phytophthora megasperma isolate gzu-jck-gp26 28S ribosomal RNA gene, partial sequence blastn 26717 473 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
9819984 9819984 PRJNA911178_P_NODE_19708_length_756_cov_23.370425_g17572_i0 PRJNA911178 19708 756 23.370425 176.680413 Sclerospora graminicola 162130 SAR_Eukaryotes SAR_Eukaryotes 1175 0   NTclustered gi|33520242|gb|AY273987.1| 162130 g17572 i0 95.748 96.6018518518518 729 30 96 1 1 729 741 14 Sclerospora graminicola large subunit ribosomal RNA gene, partial sequence blastn 73031 1175 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Sclerospora Sclerospora graminicola
9821327 9821327 PRJNA911178_P_NODE_72728_length_414_cov_1.771261_g70265_i0 PRJNA911178 72728 414 1.771261 7.33302054 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 196 1.74e-45   NTclustered gi|301114940|ref|XM_002999194.1| 403677 g70265 i0 80.075 8.30917874396135 266 51 64 2 3 267 854 590 Phytophthora infestans T30-4 pyrophosphate-energized vacuolar membrane proton pump, putative (PITG_05615), partial mRNA blastn 3440 196 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
9821411 9821411 PRJNA911178_P_NODE_81628_length_393_cov_14.109375_g79161_i0 PRJNA911178 81628 393 14.109375 55.44984375 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 102 3.68e-17   NTclustered gi|325194684|emb|FR825494.1| 890382 g79161 i0 78.035 9.8295165394402 173 31 43 7 5 174 34 202 Albugo laibachii Nc14, genomic contig CONTIG_2365_NC14_v4_847_33331 blastn 3863 102 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
12371683 12371683 PRJNA911178_P_NODE_262510_length_247_cov_0.885057_g260036_i0 PRJNA911178 262510 247 0.885057 2.18609079 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 187 5.87e-43   NTclustered gi|675166828|ref|XM_008894051.1| 761204 g260036 i0 80.658 15.3684210526316 243 45 98 2 3 244 807 1048 Phytophthora parasitica INRA-310 V-type H(+)-translocating pyrophosphatase mRNA blastn 3796 187 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
13646532 13646532 PRJNA911178_P_NODE_291391_length_241_cov_1.488095_g288917_i0 PRJNA911178 291391 241 1.488095 3.58630895 Phytophthora bilorbang 1197710 SAR_Eukaryotes SAR_Eukaryotes 178 3.43e-40   NTclustered gi|2843530741|gb|PQ231396.1| 1197710 g288917 i0 83.59 83.1369294605809 195 26 80 3 46 237 395 204 Phytophthora bilorbang isolate BD261 cytochrome c oxidase subunit I (coxI) gene, partial cds; mitochondrial blastn 20036 178 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora bilorbang
13646879 13646879 PRJNA911178_P_NODE_53271_length_475_cov_6.781095_g50836_i0 PRJNA911178 53271 475 6.781095 32.21020125 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 869 0   NTclustered gi|158519309|gb|EU054869.1| 123356 g50836 i0 99.789 99.2842105263158 473 1 99 0 3 475 281 753 Hyaloperonospora parasitica strain J661/01 (TUB 12425) large subunit ribosomal RNA gene, partial sequence blastn 47160 869 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
14921073 14921073 PRJNA911178_P_NODE_43052_length_524_cov_4.957871_g40635_i0 PRJNA911178 43052 524 4.957871 25.97924404 Phytophthora cactorum 29920 SAR_Eukaryotes SAR_Eukaryotes 187 1.3499999999999997e-42   NTclustered gi|1490229970|gb|MH094138.1| 29920 g40635 i0 90.714 27.3091603053435 140 13 27 0 318 457 675 536 Phytophthora cactorum isolate KRJ1 ATP synthase protein 9 (atp9) gene, partial cds; NADH dehydrogenase subunit 9 (nad9) gene, complete cds; and apocytochrome b (cob) gene, partial cds; mitochondrial blastn 14310 187 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
16196259 16196259 PRJNA911178_P_NODE_6893_length_1238_cov_27.542489_g5599_i0 PRJNA911178 6893 1238 27.542489 340.97601382 Globisporangium heterothallicum 2708265 SAR_Eukaryotes SAR_Eukaryotes 791 0   NTclustered gi|1465230746|gb|MG770233.1| 2708265 g5599 i0 80.478 84.8231017770598 1045 194 84 10 128 1167 1040 1 Pythium heterothallicum strain SDPL-1 cytochrome c oxidase subunit 1 gene, partial cds; mitochondrial blastn 105011 791 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium heterothallicum
16196444 16196444 PRJNA911178_P_NODE_8793_length_1115_cov_2.949136_g7289_i0 PRJNA911178 8793 1115 2.949136 32.8828664 Phytophthora sp. ML-2023a 3044284 SAR_Eukaryotes SAR_Eukaryotes 512 4.3299999999999985e-140   NTclustered gi|2500404807|gb|OQ735416.1| 3044284 g7289 i0 78.465 37.1201793721973 808 156 72 17 181 979 7123 6325 Phytophthora sp. ML-2023a voucher AM18FRL12 mitochondrion, complete genome blastn 41389 512 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sp. ML-2023a
16196502 16196502 PRJNA911178_P_NODE_94153_length_370_cov_12.043771_g91683_i0 PRJNA911178 94153 370 12.043771 44.5619527 uncultured Hyaloperonospora 660915 SAR_Eukaryotes SAR_Eukaryotes 673 0   NTclustered gi|254658402|gb|FJ537328.1| 660915 g91683 i0 100 99.0027027027027 364 0 98 0 1 364 364 1 Uncultured Hyaloperonospora clone Biosope_T41.118 18S ribosomal RNA gene, partial sequence blastn 36631 673 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora uncultured Hyaloperonospora
17827781 17827781 PRJNA911178_P_NODE_279094_length_243_cov_3.641176_g276620_i0 PRJNA911178 279094 243 3.641176 8.84805768 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 429 8.66e-116   NTclustered gi|1663822451|gb|MH730823.1| 162094 g276620 i0 100 95.4444444444444 232 0 95 0 8 239 753 522 Peronospora hiemalis voucher GLM75690 28S ribosomal RNA gene, partial sequence blastn 23193 429 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora hiemalis
18744517 18744517 PRJNA911178_P_NODE_302435_length_230_cov_22.375796_g299961_i0 PRJNA911178 302435 230 22.375796 51.4643308 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 263 8.71e-66   NTclustered gi|695467755|ref|XM_009541406.1| 67593 g299961 i0 88.288 91.3826086956522 222 22 96 4 1 220 651 870 Phytophthora sojae hypothetical protein mRNA blastn 21018 263 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
18744553 18744553 PRJNA911178_P_NODE_307175_length_213_cov_12.285714_g304701_i0 PRJNA911178 307175 213 12.285714 26.16857082 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 383 5.8499999999999996e-102   NTclustered gi|158519309|gb|EU054869.1| 123356 g304701 i0 100 97.0422535211268 207 0 97 0 7 213 768 974 Hyaloperonospora parasitica strain J661/01 (TUB 12425) large subunit ribosomal RNA gene, partial sequence blastn 20670 383 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
19101730 19101730 PRJNA911178_P_NODE_268395_length_245_cov_31.848837_g265921_i0 PRJNA911178 268395 245 31.848837 78.02965065 Hyaloperonospora 184462 SAR_Eukaryotes SAR_Eukaryotes 375 1.16e-99   NTclustered gi|33520229|gb|AY273974.1| 162125 g265921 i0 94.309 100.910204081633 246 13 100 1 1 245 697 452 Hyaloperonospora brassicae large subunit ribosomal RNA gene, partial sequence blastn 24723 375 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
19101864 19101864 PRJNA911178_P_NODE_298595_length_236_cov_2.503067_g296121_i0 PRJNA911178 298595 236 2.503067 5.90723812 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 224 4.2399999999999996e-54   NTclustered gi|145932329|ref|NC_009385.1| 67593 g296121 i0 85.849 74.4872881355932 212 28 89 2 22 232 23924 23714 Phytophthora sojae mitochondrion, complete genome blastn 17579 226 0.991150442477876 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
20018570 20018570 PRJNA911178_P_NODE_187576_length_278_cov_6.897561_g185103_i0 PRJNA911178 187576 278 6.897561 19.17521958 Sclerospora graminicola 162130 SAR_Eukaryotes SAR_Eukaryotes 507 4.54e-139   NTclustered gi|410516518|gb|JX569267.1| 162130 g185103 i0 100 98.4280575539568 274 0 99 0 1 274 620 347 Sclerospora graminicola strain Sg 445 28S ribosomal RNA gene, partial sequence blastn 27363 507 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Sclerospora Sclerospora graminicola
20018626 20018626 PRJNA911178_P_NODE_193256_length_275_cov_2.123762_g190783_i0 PRJNA911178 193256 275 2.123762 5.8403455 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 171 6.69e-38   NTclustered gi|673019533|ref|XM_008865506.1| 157072 g190783 i0 90.076 16.8290909090909 131 13 48 0 137 267 106 236 Aphanomyces invadans hypothetical protein mRNA blastn 4628 171 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
21294017 21294017 PRJNA911178_P_NODE_195397_length_274_cov_1.636816_g192924_i0 PRJNA911178 195397 274 1.636816 4.48487584 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 263 1.07e-65   NTclustered gi|675199806|ref|XM_008910540.1| 761204 g192924 i0 85.6 89.7554744525548 250 36 91 0 10 259 471 222 Phytophthora parasitica INRA-310 calmodulin mRNA blastn 24593 263 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
21295342 21295342 PRJNA911178_P_NODE_73317_length_412_cov_142.073746_g70854_i0 PRJNA911178 73317 412 142.073746 585.34383352 Phytophthora sp. ML-2023a 3044284 SAR_Eukaryotes SAR_Eukaryotes 113 1.79e-20   NTclustered gi|2500404807|gb|OQ735416.1| 3044284 g70854 i0 76.733 44.7572815533981 202 47 49 0 184 385 15700 15901 Phytophthora sp. ML-2023a voucher AM18FRL12 mitochondrion, complete genome blastn 18440 113 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sp. ML-2023a
22569616 22569616 PRJNA911178_P_NODE_255338_length_248_cov_1.005714_g252864_i0 PRJNA911178 255338 248 1.005714 2.49417072 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 119 2.18e-22   NTclustered gi|813157040|ref|XM_012346479.1| 695850 g252864 i0 83.212 37.9354838709677 137 15 54 6 56 188 914 782 Saprolegnia parasitica CBS 223.65 malate synthase A mRNA blastn 9408 119 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
22570051 22570051 PRJNA911178_P_NODE_306838_length_216_cov_6.328671_g304364_i0 PRJNA911178 306838 216 6.328671 13.66992936 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 259 1.05e-64   NTclustered gi|675216711|ref|XR_608069.1| 761204 g304364 i0 89.048 67.0740740740741 210 22 97 1 7 216 3280 3488 Phytophthora parasitica INRA-310 28S ribosomal RNA partial rRNA blastn 14488 259 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
23845095 23845095 PRJNA911178_P_NODE_289439_length_242_cov_0.911243_g286965_i0 PRJNA911178 289439 242 0.911243 2.20520806 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 180 9.58e-41   NTclustered gi|301105838|ref|XM_002901957.1| 403677 g286965 i0 82.243 57.9297520661157 214 33 88 3 6 218 625 834 Phytophthora infestans T30-4 heat shock 70 kDa protein (PITG_11244), mRNA blastn 14019 180 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
23845473 23845473 PRJNA911178_P_NODE_50919_length_485_cov_10.315534_g48490_i0 PRJNA911178 50919 485 10.315534 50.0303399 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 5.54e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g48490 i0 80.533 69.7484536082474 375 65 76 4 35 402 68 441 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
24201718 24201718 PRJNA911178_P_NODE_246719_length_250_cov_0.870056_g244245_i0 PRJNA911178 246719 250 0.870056 2.17514 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 195 3.55e-45   NTclustered gi|166303|gb|J05116.1|ACKCAL 4767 g244245 i0 85.561 44.564 187 26 75 1 57 243 948 763 A.klebsiana calmodulin gene, complete cds blastn 11141 195 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
25477045 25477045 PRJNA911178_P_NODE_35300_length_575_cov_2.944223_g32923_i0 PRJNA911178 35300 575 2.944223 16.92928225 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 470 1.32e-127   NTclustered gi|156987829|gb|EU080455.1| 4785 g32923 i0 81.818 98.5078260869565 572 92 98 12 3 568 603 38 Phytophthora cinnamomi isolate PD_00394(P7154) translation elongation factor 1-alpha (EF1A) gene, partial cds blastn 56642 470 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;