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contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA911178" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA911178 · 17 ✖

analysis 1

  • blastn · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1250020 1250020 PRJNA911178_P_NODE_20561_length_741_cov_16.220060_g18388_i0 PRJNA911178 20561 741 16.22006 120.1906446 Metazoa 33208 Nematoda Nematoda 152 7.109999999999999e-32   NTclustered gi|158821894|gb|EU195958.1| 473172 g18388 i0 94 22.7327935222672 100 6 13 0 1 100 1991 1892 Protorhabditis sp. JB122 28S ribosomal RNA gene, partial sequence blastn 16845 152 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Protorhabditis Protorhabditis sp. JB122
5078276 5078276 PRJNA911178_P_NODE_222924_length_259_cov_2.317204_g220450_i0 PRJNA911178 222924 259 2.317204 6.00155836 Halicephalobus 114867 Nematoda Nematoda 472 1.53e-128   NTclustered gi|564659230|gb|KF765478.1| 114868 g220450 i0 100 92.2123552123552 255 0 98 0 1 255 288 34 Halicephalobus gingivalis isolate Indigo S1342-13 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23883 472 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus gingivalis
5996499 5996499 PRJNA911178_P_NODE_55485_length_467_cov_1.862944_g53048_i0 PRJNA911178 55485 467 1.862944 8.69994848 Halicephalobus gingivalis 114868 Nematoda Nematoda 824 0   NTclustered gi|1003466878|gb|KU180686.1| 114868 g53048 i0 98.915 35.406852248394 461 5 99 0 7 467 1186 1646 Halicephalobus gingivalis 28S ribosomal RNA gene, partial sequence blastn 16535 824 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus gingivalis
7627677 7627677 PRJNA911178_P_NODE_133506_length_320_cov_1.736842_g131033_i0 PRJNA911178 133506 320 1.736842 5.5578944 Chromadorea 119089 Nematoda Nematoda 100 1.06e-16   NTclustered gi|1380950762|gb|MH244508.1| 2172462 g131033 i0 83.036 27.0375 112 17 35 2 28 138 779 669 Coynema poeyi large subunit ribosomal RNA gene, partial sequence blastn 8652 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Hystrignathidae Coynema Coynema poeyi
8544576 8544576 PRJNA911178_P_NODE_149787_length_305_cov_1.327586_g147314_i0 PRJNA911178 149787 305 1.327586 4.0491373 Diploscapter sp. 55800 Nematoda Nematoda 521 1.8e-143   NTclustered gi|2874367539|gb|PQ819468.1| 55800 g147314 i0 97.705 16.1377049180328 305 4 100 2 1 305 55 356 Diploscapter sp. isolate Beetle-FN84 large subunit ribosomal RNA gene, partial sequence blastn 4922 521 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp.
9819460 9819460 PRJNA911178_P_NODE_136108_length_317_cov_4.250000_g133635_i0 PRJNA911178 136108 317 4.25 13.4725 Strongyloides ratti 34506 Nematoda Nematoda 54.7 0.008   NTclustered gi|1376154095|ref|XM_024646641.1| 34506 g133635 i0 96.875 0.100946372239748 32 1 10 0 100 131 197 166 Strongyloides ratti Zona pellucida domain-containing protein (SRAE_X000123300), partial mRNA blastn 32 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
10178237 10178237 PRJNA911178_P_NODE_140188_length_313_cov_4.137500_g137715_i0 PRJNA911178 140188 313 4.1375 12.950375 Metazoa 33208 Nematoda Nematoda 52.8 0.029   NTclustered gi|270309021|dbj|AB500154.1| 6325 g137715 i0 100 0.626198083067093 28 0 9 0 286 313 28 1 Bursaphelenchus mucronatus genes for 26S ribosomal RNA, intergenic spacer with variation 1, 18S ribosomal RNA, partial and complete sequence blastn 196 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus mucronatus
10178975 10178975 PRJNA911178_P_NODE_302948_length_230_cov_2.305732_g300474_i0 PRJNA911178 302948 230 2.305732 5.3031836 Metazoa 33208 Nematoda Nematoda 409 1.0600000000000001e-109   NTclustered gi|158821895|gb|EU195959.1| 479134 g300474 i0 99.119 71.9478260869565 227 2 99 0 1 227 1918 1692 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 16548 409 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
11453601 11453601 PRJNA911178_P_NODE_189429_length_277_cov_3.602941_g186956_i0 PRJNA911178 189429 277 3.602941 9.98014657 Oscheius 42476 Nematoda Nematoda 60.2 1.52e-4   NTclustered gi|158821906|gb|EU195970.1| 96645 g186956 i0 94.737 1.09747292418773 38 2 14 0 139 176 1403 1440 Oscheius dolichuroides strain DF5018 28S ribosomal RNA gene, partial sequence blastn 304 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius dolichuroides
15278260 15278260 PRJNA911178_P_NODE_288492_length_242_cov_0.911243_g286018_i0 PRJNA911178 288492 242 0.911243 2.20520806 Halicephalobus 114867 Nematoda Nematoda 429 8.619999999999998e-116   NTclustered gi|2452508156|gb|OQ594699.1| 3032787 g286018 i0 100 87.3884297520661 232 0 96 0 10 241 75 306 Halicephalobus sp. CFB169 small subunit ribosomal RNA gene, partial sequence blastn 21148 429 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. CFB169
16195657 16195657 PRJNA911178_P_NODE_285193_length_242_cov_1.804734_g282719_i0 PRJNA911178 285193 242 1.804734 4.36745628 Pseudodiplogasteroides sp. VS-2014 1538704 Nematoda Nematoda 152 2.0899999999999998e-32   NTclustered gi|675118779|gb|KJ877250.1| 1538704 g282719 i0 83.234 45.5082644628099 167 26 69 2 76 241 3220 3055 Pseudodiplogasteroides sp. VS-2014 strain SB257 28S ribosomal RNA gene, partial sequence blastn 11013 152 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Pseudodiplogasteroides Pseudodiplogasteroides sp. VS-2014
19101856 19101856 PRJNA911178_P_NODE_297875_length_237_cov_2.439024_g295401_i0 PRJNA911178 297875 237 2.439024 5.78048688 Metazoa 33208 Nematoda Nematoda 427 3.03e-115   NTclustered gi|2874367539|gb|PQ819468.1| 55800 g295401 i0 100 46.6540084388186 231 0 97 0 7 237 366 596 Diploscapter sp. isolate Beetle-FN84 large subunit ribosomal RNA gene, partial sequence blastn 11057 427 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp.
19102053 19102053 PRJNA911178_P_NODE_49915_length_490_cov_1.954436_g47487_i0 PRJNA911178 49915 490 1.954436 9.5767364 Diploscapter 55799 Nematoda Nematoda 885 0   NTclustered gi|4099006|gb|U81586.1|DSU81586 55800 g47487 i0 99.385 86.1204081632653 488 3 99 0 1 488 1011 524 Diploscapter sp. 18S small subunit ribosomal RNA gene, partial sequence blastn 42199 885 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp.
20018253 20018253 PRJNA911178_P_NODE_150276_length_304_cov_4.844156_g147803_i0 PRJNA911178 150276 304 4.844156 14.72623424 Diploscapter sp. JU359 479134 Nematoda Nematoda 542 1.38e-149   NTclustered gi|158821895|gb|EU195959.1| 479134 g147803 i0 99.007 58.8190789473684 302 3 99 0 1 302 1585 1284 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 17881 542 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
21651933 21651933 PRJNA911178_P_NODE_156917_length_299_cov_1.212389_g154444_i0 PRJNA911178 156917 299 1.212389 3.62504311 Diploscapter 55799 Nematoda Nematoda 540 4.87e-149   NTclustered gi|8515048|gb|AF083009.1| 96671 g154444 i0 99.329 98.9297658862876 298 2 99 0 1 298 354 57 Diploscapter sp. PS1897 18S ribosomal RNA gene, partial sequence blastn 29580 545 0.990825688073395 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. PS1897
22570026 22570026 PRJNA911178_P_NODE_303778_length_228_cov_4.754839_g301304_i0 PRJNA911178 303778 228 4.754839 10.84103292 Caenorhabditis remanei 31234 Nematoda Nematoda 54.7 0.006   NTclustered gi|2445392365|ref|XM_053735414.1| 31234 g301304 i0 100 0.12719298245614 29 0 13 0 171 199 877 905 Caenorhabditis remanei uncharacterized protein (GCK72_023494), partial mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
25477435 25477435 PRJNA911178_P_NODE_97540_length_365_cov_1.568493_g95070_i0 PRJNA911178 97540 365 1.568493 5.72499945 Ascarididae 6250 Nematoda Nematoda 588 2.1399999999999994e-163   NTclustered gi|32527518|gb|AY210806.1| 6252 g95070 i0 96.111 99.572602739726 360 14 99 0 2 361 2425 2066 Ascaris lumbricoides 5.8S ribosomal RNA and 28S ribosomal RNA genes, partial sequence blastn 36344 593 0.991568296795953 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ascarididae Ascaris Ascaris lumbricoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;