RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA911178" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA911178 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
892903 892903 PRJNA911178_P_NODE_299621_length_234_cov_28.142857_g297147_i0 PRJNA911178 299621 234 28.142857 65.85428538 Gromochytrium mamkaevae 1486924 Fungi Fungi 87.9 5.74e-13   NTclustered gi|612507318|gb|KF586842.1| 1486924 g297147 i0 96.226 7.11965811965812 53 2 23 0 182 234 6129 6181 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1666 87.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
3444228 3444228 PRJNA911178_P_NODE_71443_length_417_cov_2.889535_g68981_i0 PRJNA911178 71443 417 2.889535 12.04936095 Rhizophydium sp. 2012224 Fungi Fungi 276 2.19e-69   NTclustered gi|1866582435|gb|MT730610.1| 2012224 g68981 i0 80.238 94.7002398081535 420 40 99 25 2 414 4379 3996 Rhizophydium sp. isolate ARG035 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 39490 276 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Rhizophydiaceae Rhizophydium Rhizophydium sp.
5994718 5994718 PRJNA911178_P_NODE_124865_length_329_cov_2.031250_g122393_i0 PRJNA911178 124865 329 2.03125 6.6828125 Rhizophlyctis rosea 64517 Fungi Fungi 603 6.819999999999999e-168   NTclustered gi|82398309|gb|DQ273787.1| 64517 g122393 i0 99.696 100.109422492401 329 1 100 0 1 329 1565 1893 Rhizophlyctis rosea isolate AFTOL-ID 43 28S ribosomal RNA gene, partial sequence blastn 32936 603 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea
7627641 7627641 PRJNA911178_P_NODE_126886_length_327_cov_1.500000_g124414_i0 PRJNA911178 126886 327 1.5 4.905 Endochytrium 109937 Fungi Fungi 200 1.0399999999999999e-46   NTclustered gi|1866582723|gb|MT730898.1| 2011712 g124414 i0 81.124 77.0886850152905 249 47 76 0 75 323 4052 3804 Cladochytriales sp. isolate JEL0931 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25208 200 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales     Cladochytriales sp.
13646198 13646198 PRJNA911178_P_NODE_254291_length_248_cov_1.702857_g251817_i0 PRJNA911178 254291 248 1.702857 4.22308536 Feramyces austinii 2170546 Fungi Fungi 409 1.16e-109   NTclustered gi|1388116306|gb|MH043840.1| 2170546 g251817 i0 100 30.7258064516129 221 0 89 0 21 241 1 221 Feramyces austinii strain WSF3a Glycosyl hydrolase family 130 mRNA, partial cds blastn 7620 409 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Feramyces Feramyces austinii
20020212 20020212 PRJNA911178_P_NODE_90436_length_377_cov_1.250000_g87966_i0 PRJNA911178 90436 377 1.25 4.7125 Polychytrium aggregatum 110093 Fungi Fungi 477 5e-130   NTclustered gi|2432131711|ref|XM_053109357.1| 110093 g87966 i0 90.191 96.2705570291777 367 35 97 1 6 372 568 203 Polychytrium aggregatum calmodulin (BJ171DRAFT_488251), mRNA blastn 36294 477 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;