RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA911178" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA911178 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11454376 11454376 PRJNA911178_P_NODE_59369_length_453_cov_2.444737_g56923_i0 PRJNA911178 59369 453 2.444737 11.07465861 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 244 6.75e-60   NTclustered gi|551548842|ref|XM_005762007.1| 280463 g56923 i0 86.818 3.3841059602649 220 27 48 2 229 447 402 184 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 1533 246 0.991869918699187 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
24201806 24201806 PRJNA911178_P_NODE_265359_length_246_cov_1.080925_g262885_i0 PRJNA911178 265359 246 1.080925 2.6590755 Pavlovaceae 418969 Haptophyta other_Eukaryota 124 4.64e-24   NTclustered gi|318084122|gb|HM595057.1| 119497 g262885 i0 81.481 1.97560975609756 162 20 63 10 37 192 3085 2928 Exanthemachrysis gayraliae strain AC15 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; plastid blastn 486 124 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Exanthemachrysis Exanthemachrysis gayraliae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;