RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA911178" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 6 ✖

bioproject 1

  • PRJNA911178 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4720436 4720436 PRJNA911178_P_NODE_179204_length_283_cov_2.461905_g176731_i0 PRJNA911178 179204 283 2.461905 6.96719115 Thecamonas trahens 529818 Root_unresolved Root_unresolved 121 7.059999999999999e-23   NTclustered gi|923136453|ref|XM_013906238.1| 461836 g176731 i0 81.818 0.749116607773852 143 26 51 0 5 147 290 148 Thecamonas trahens ATCC 50062 50S ribosomal protein L36e (AMSG_01644), partial mRNA blastn 212 121 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
5995581 5995581 PRJNA911178_P_NODE_228045_length_257_cov_1.293478_g225571_i0 PRJNA911178 228045 257 1.293478 3.32423846 Thecamonas trahens 529818 Root_unresolved Root_unresolved 54.7 0.006   NTclustered gi|923131822|ref|XM_013903923.1| 461836 g225571 i0 92.308 0.151750972762646 39 1 15 2 50 88 590 554 Thecamonas trahens ATCC 50062 uncharacterized protein (AMSG_02458), partial mRNA blastn 39 54.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
8546408 8546408 PRJNA911178_P_NODE_74947_length_408_cov_4.438806_g72484_i0 PRJNA911178 74947 408 4.438806 18.11032848 Cavaliersmithia chaoae 3003318 Root_unresolved Root_unresolved 200 1.32e-46   NTclustered gi|2206682172|gb|OM966645.1| 3003318 g72484 i0 89.744 37.5980392156863 156 16 38 0 185 340 6608 6453 Cavaliersmithia chaoae strain FABANU small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15340 200 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Cavaliersmithia Cavaliersmithia chaoae
13646193 13646193 PRJNA911178_P_NODE_253271_length_248_cov_9.914286_g250797_i0 PRJNA911178 253271 248 9.914286 24.58742928 Thecamonas trahens 529818 Root_unresolved Root_unresolved 261 3.42e-65   NTclustered gi|923124074|ref|XM_013900052.1| 461836 g250797 i0 88.479 83.7540322580645 217 23 87 2 32 247 1 216 Thecamonas trahens ATCC 50062 actin-3 (AMSG_08145), partial mRNA blastn 20771 261 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
16196026 16196026 PRJNA911178_P_NODE_44913_length_514_cov_1225.154195_g42492_i0 PRJNA911178 44913 514 1225.154195 6297.2925623 Karpovia croatica 2925417 Root_unresolved Root_unresolved 100 1.77e-16   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g42492 i0 88.235 12.147859922179 85 9 17 1 69 153 6103 6020 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6244 100 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica
25118849 25118849 PRJNA911178_P_NODE_281080_length_243_cov_1.200000_g278606_i0 PRJNA911178 281080 243 1.2 2.916 Thecamonas trahens 529818 Root_unresolved Root_unresolved 187 5.7499999999999985e-43   NTclustered gi|923120946|ref|XM_013898491.1| 461836 g278606 i0 83.838 25.9794238683128 198 30 81 2 47 243 350 546 Thecamonas trahens ATCC 50062 polyadenylate-binding protein 1-B (AMSG_09898), partial mRNA blastn 6313 187 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;