RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA909412" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA909412 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3441497 3441497 PRJNA909412_P_NODE_1863_length_399_cov_2.166667_g1723_i0 PRJNA909412 1863 399 2.166667 8.64500133 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 636 8.299999999999999e-178   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g1723 i0 95.489 163.611528822055 399 16 100 1 1 399 1808 1412 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 65281 636 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
5993871 5993871 PRJNA909412_P_NODE_1185_length_515_cov_2.941176_g1048_i0 PRJNA909412 1185 515 2.941176 15.1470564 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 523 8.889999999999997e-144   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g1048 i0 89.951 240.594174757282 408 37 79 3 2 408 1384 980 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 123906 523 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
5993947 5993947 PRJNA909412_P_NODE_3785_length_270_cov_1.909091_g3644_i0 PRJNA909412 3785 270 1.909091 5.1545457 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 455 1.6100000000000002e-123   NTclustered gi|2874254065|emb|OY970130.1| 412056 g3644 i0 97.037 84.9037037037037 270 8 100 0 1 270 5153588 5153319 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 22924 455 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
16193475 16193475 PRJNA909412_P_NODE_1853_length_400_cov_2.445983_g1713_i0 PRJNA909412 1853 400 2.445983 9.783932 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 662 0   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g1713 i0 96.725 160.4025 397 13 99 0 4 400 653 257 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 64161 662 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
17468997 17468997 PRJNA909412_P_NODE_6194_length_211_cov_0.953488_g6053_i0 PRJNA909412 6194 211 0.953488 2.01185968 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 379 7.489999999999999e-101   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g6053 i0 99.052 119.284360189573 211 2 100 0 1 211 664 874 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 25169 379 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
19100684 19100684 PRJNA909412_P_NODE_11135_length_171_cov_3.272727_g10994_i0 PRJNA909412 11135 171 3.272727 5.59636317 Prosthecobacter 48463 Bacteria Bacteria 316 4.6e-82   NTclustered gi|219846433|ref|NR_026024.1| 48464 g10994 i0 100 100.005847953216 171 0 100 0 1 171 1230 1060 Prosthecobacter fusiformis strain FC4 16S ribosomal RNA, partial sequence blastn 17101 316 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;