RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA909412" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA909412 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3441455 3441455 PRJNA909412_P_NODE_1403_length_465_cov_11.967136_g1264_i0 PRJNA909412 1403 465 11.967136 55.6471824 Keratella quadrata 204742 Rotifera other_Eukaryota 448 4.929999999999999e-121   NTclustered gi|83285188|gb|DQ297735.1| 204742 g1264 i0 84.532 70.5698924731183 459 64 98 7 11 465 770 315 Keratella quadrata 28S ribosomal RNA gene, partial sequence blastn 32815 448 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Keratella Keratella quadrata
4719234 4719234 PRJNA909412_P_NODE_6304_length_209_cov_1.470588_g6163_i0 PRJNA909412 6304 209 1.470588 3.07352892 Brachionus manjavacas 667381 Rotifera other_Eukaryota 75 3.91e-9   NTclustered gi|2006240371|gb|MW559986.1| 667381 g6163 i0 88.889 5.26315789473684 63 3 29 3 116 175 6201 6262 Brachionus manjavacas isolate AU chromosome I mitochondrion, complete sequence blastn 1100 75 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus manjavacas
8543554 8543554 PRJNA909412_P_NODE_11527_length_168_cov_2.596899_g11386_i0 PRJNA909412 11527 168 2.596899 4.36279032 Cephalodella forficula 360656 Rotifera other_Eukaryota 305 9.81e-79   NTclustered gi|83285081|gb|DQ297693.1| 360656 g11386 i0 99.405 99.9761904761905 168 1 100 0 1 168 797 630 Cephalodella forficula 18S ribosomal RNA gene, partial sequence blastn 16796 305 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Notommatidae Cephalodella Cephalodella forficula
9818550 9818550 PRJNA909412_P_NODE_16948_length_151_cov_1.964286_g16807_i0 PRJNA909412 16948 151 1.964286 2.96607186 Euchlanis alata 338269 Rotifera other_Eukaryota 213 5.34e-51   NTclustered gi|83655555|gb|DQ079942.1| 338269 g16807 i0 92.053 42.2715231788079 151 12 100 0 1 151 3 153 Euchlanis alata 28S ribosomal RNA gene, partial sequence blastn 6383 213 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Euchlanis Euchlanis alata
20375524 20375524 PRJNA909412_P_NODE_6256_length_209_cov_3.394118_g6115_i0 PRJNA909412 6256 209 3.394118 7.09370662 Ploima 84394 Rotifera other_Eukaryota 237 4.71e-58   NTclustered gi|308156994|gb|GQ890459.1| 360688 g6115 i0 87.44 88.4114832535885 207 24 99 2 1 207 432 636 Platyias quadricornis isolate DNA197 large subunit ribosomal RNA gene, partial sequence blastn 18478 237 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Platyias Platyias quadricornis
23842949 23842949 PRJNA909412_P_NODE_6059_length_213_cov_1.201149_g5918_i0 PRJNA909412 6059 213 1.201149 2.55844737 Brachionus rubens 392764 Rotifera other_Eukaryota 174 3.83e-39   NTclustered gi|1802791198|gb|MN256531.1| 392764 g5918 i0 82.353 29.4600938967136 204 32 96 3 10 213 11192 11391 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 6275 174 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;