RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA909412" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA909412 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4719229 4719229 PRJNA909412_P_NODE_5724_length_218_cov_2.782123_g5583_i0 PRJNA909412 5724 218 2.782123 6.06502814 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 106 1.46e-18   NTclustered gi|166034691|emb|CU356728.1| 100861 g5583 i0 84.259 3.46330275229358 108 17 50 0 29 136 735 842 Aphanomyces euteiches cDNA blastn 755 106 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
7268849 7268849 PRJNA909412_P_NODE_2066_length_375_cov_2.690476_g1926_i0 PRJNA909412 2066 375 2.690476 10.089285 Achlya klebsiana 4767 SAR_Eukaryotes SAR_Eukaryotes 324 6.85e-84   NTclustered gi|166301|gb|J05597.1|ACKBTUB 4767 g1926 i0 86.333 75.0506666666667 300 37 79 2 79 375 1542 1244 A.klebsiana beta-tubulin gene, complete cds blastn 28144 324 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
9818557 9818557 PRJNA909412_P_NODE_17788_length_150_cov_1.927928_g17647_i0 PRJNA909412 17788 150 1.927928 2.891892 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 267 4.009999999999999e-67   NTclustered gi|33520250|gb|AY273995.1| 92964 g17647 i0 98.667 86.04 150 2 100 0 1 150 113 262 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 12906 267 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;