RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA909412" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA909412 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4719252 4719252 PRJNA909412_P_NODE_9964_length_172_cov_3.488722_g9823_i0 PRJNA909412 9964 172 3.488722 6.00060184 Nannocystis punicea 2995304 Bacteria Bacteria 54.7 0.004   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g9823 i0 96.875 0.186046511627907 32 1 19 0 8 39 4602685 4602716 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 32 54.7 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea
13644353 13644353 PRJNA909412_P_NODE_71_length_1725_cov_21.790629_g53_i0 PRJNA909412 71 1725 21.790629 375.88835025 Pendulispora rubella 2741070 Bacteria Bacteria 2211 0   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g53 i0 89.844 158.736811594203 1733 160 100 14 1 1725 9852410 9854134 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 273821 2211 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
20017260 20017260 PRJNA909412_P_NODE_2296_length_351_cov_332.086538_g2156_i0 PRJNA909412 2296 351 332.086538 1165.62374838 Pendulispora albinea 2741071 Bacteria Bacteria 545 1.25e-150   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g2156 i0 94.618 279.22792022792 353 17 100 2 1 351 3590643 3590291 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 98009 545 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;