RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA909412" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA909412 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2165960 2165960 PRJNA909412_P_NODE_10502_length_172_cov_2.879699_g10361_i0 PRJNA909412 10502 172 2.879699 4.95308228 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 95.3 2.36e-15   NTclustered gi|2119416825|ref|XM_044686971.1| 51637 g10361 i0 87.654 9.09883720930233 81 10 47 0 1 81 579 659 Naegleria lovaniensis uncharacterized protein (C9374_011328), partial mRNA blastn 1565 95.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
17468907 17468907 PRJNA909412_P_NODE_11974_length_165_cov_1.309524_g11833_i0 PRJNA909412 11974 165 1.309524 2.1607146 Naegleria australiensis 51634 Heterolobosea other_Eukaryota 300 4.46e-77   NTclustered gi|2476253407|gb|OQ627480.1| 51634 g11833 i0 99.394 27.7212121212121 165 1 100 0 1 165 2676 2512 Naegleria australiensis strain PP397 rDNA-containing extrachromosomal element genomic sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 4574 300 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
22567831 22567831 PRJNA909412_P_NODE_5278_length_227_cov_2.106383_g5137_i0 PRJNA909412 5278 227 2.106383 4.78148941 Parafumarolamoeba stagnalis 2872509 Heterolobosea other_Eukaryota 267 6.63e-67   NTclustered gi|2086087549|gb|MZ919148.1| 2872509 g5137 i0 87.826 3.04845814977974 230 25 100 3 1 227 805 576 Parafumarolamoeba stagnalis small subunit ribosomal RNA gene, partial sequence blastn 692 267 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Parafumarolamoeba Parafumarolamoeba stagnalis
23842941 23842941 PRJNA909412_P_NODE_3259_length_291_cov_3.218254_g3118_i0 PRJNA909412 3259 291 3.218254 9.36511914 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 132 3.37e-26   NTclustered gi|290996811|ref|XM_002680930.1| 5762 g3118 i0 83.803 3.6254295532646 142 19 48 4 128 267 1611 1472 Naegleria gruberi aldehyde dehydrogenase (NAEGRDRAFT_35633), mRNA blastn 1055 132 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
25116755 25116755 PRJNA909412_P_NODE_5580_length_221_cov_1.730769_g5439_i0 PRJNA909412 5580 221 1.730769 3.82499949 Naegleria pringsheimi 234921 Heterolobosea other_Eukaryota 409 1.0100000000000001e-109   NTclustered gi|2515557648|gb|OR045415.1| 234921 g5439 i0 100 50.4932126696833 221 0 100 0 1 221 4003 4223 Naegleria pringsheimi strain Singh(s) rDNA-containing extrachromosomal element genomic sequence; 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 11159 409 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria pringsheimi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;