RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA909412" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA909412 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9818577 9818577 PRJNA909412_P_NODE_3728_length_272_cov_2.287554_g3587_i0 PRJNA909412 3728 272 2.287554 6.22214688 Candidatus Chlorohelix allophototropha 3003348 Bacteria Bacteria 235 2.31e-57   NTclustered gi|2530750984|gb|CP128400.1| 3003348 g3587 i0 95.862 324.654411764706 145 6 53 0 61 205 319752 319896 Candidatus Chlorohelix allophototropha isolate L227-S17 chromosome 2, complete sequence blastn 88306 235 1 Bacteria   Bacillati Chloroflexota Chloroflexia Candidatus Chloroheliales Candidatus Chloroheliaceae Candidatus Chlorohelix Candidatus Chlorohelix allophototropha
13644363 13644363 PRJNA909412_P_NODE_9251_length_176_cov_2.693431_g9110_i0 PRJNA909412 9251 176 2.693431 4.74043856 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 185 1.4e-42   NTclustered gi|2874253706|emb|OY969433.1| 1672391 g9110 i0 91.241 227.556818181818 137 10 77 2 41 176 1066057 1066192 MAG: uncultured Chloroflexia bacterium isolate MFD00008.bin.1.123 genome assembly, chromosome: 1 blastn 40050 185 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
14918686 14918686 PRJNA909412_P_NODE_4812_length_238_cov_2.065327_g4671_i0 PRJNA909412 4812 238 2.065327 4.91547826 Ktedonosporobacter rubrisoli 2509675 Bacteria Bacteria 211 3.33e-50   NTclustered gi|1574824432|gb|CP035758.1| 2509675 g4671 i0 82.988 9.22689075630252 241 34 100 6 1 238 4663220 4663456 Ktedonosporobacter rubrisoli strain SCAWS-G2 chromosome, complete genome blastn 2196 211 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Ktedonosporobacteraceae Ktedonosporobacter Ktedonosporobacter rubrisoli
23842944 23842944 PRJNA909412_P_NODE_3899_length_266_cov_2.797357_g3758_i0 PRJNA909412 3899 266 2.797357 7.44096962 Thermosporothrix sp. COM3 2490863 Bacteria Bacteria 263 1.03e-65   NTclustered gi|1606557374|dbj|AP019376.1| 2490863 g3758 i0 83.212 368.575187969925 274 38 100 2 1 266 5335167 5334894 Thermosporothrix sp. COM3 DNA, nearly complete genome blastn 98041 263 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Thermosporotrichaceae Thermosporothrix Thermosporothrix sp. COM3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;