RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA909412" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA909412 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4719222 4719222 PRJNA909412_P_NODE_3984_length_263_cov_4.187500_g3843_i0 PRJNA909412 3984 263 4.1875 11.013125 Acidobacteriota bacterium 1978231 Bacteria Bacteria 387 5.79e-103   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g3843 i0 93.156 171.243346007605 263 18 100 0 1 263 3300759 3301021 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 45037 387 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
7268850 7268850 PRJNA909412_P_NODE_2086_length_373_cov_3.041916_g1946_i0 PRJNA909412 2086 373 3.041916 11.34634668 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 616 9.999999999999999e-172   NTclustered gi|217038907|gb|EU810998.1| 171953 g1946 i0 100 355.029490616622 333 0 89 0 41 373 1 333 Uncultured Acidobacteria bacterium clone 01QCK 23S ribosomal RNA gene, partial sequence blastn 132426 616 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
11094263 11094263 PRJNA909412_P_NODE_16889_length_151_cov_2.089286_g16748_i0 PRJNA909412 16889 151 2.089286 3.15482186 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 257 2.43e-64   NTclustered gi|2874253760|emb|OY969701.1| 2283092 g16748 i0 97.351 114.456953642384 151 4 100 0 1 151 3175106 3175256 MAG: Pyrinomonadaceae bacterium isolate MFD04212.bin.c.1 genome assembly, chromosome: 1 blastn 17283 257 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
14918688 14918688 PRJNA909412_P_NODE_5092_length_231_cov_4.432292_g4951_i0 PRJNA909412 5092 231 4.432292 10.23859452 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 333 6.579999999999999e-87   NTclustered gi|2874253931|emb|OY970256.1| 2283092 g4951 i0 92.641 42.3030303030303 231 17 100 0 1 231 359903 359673 MAG: Pyrinomonadaceae bacterium isolate MFD09212.bin.c.2 genome assembly, chromosome: 1 blastn 9772 333 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
16193500 16193500 PRJNA909412_P_NODE_6993_length_199_cov_2.775000_g6852_i0 PRJNA909412 6993 199 2.775 5.52225 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 237 4.44e-58   NTclustered gi|2874253710|emb|OY969475.1| 2283092 g6852 i0 88.557 141.452261306533 201 15 98 5 4 199 1821056 1820859 MAG: Pyrinomonadaceae bacterium isolate MFD01916.bin.c.1 genome assembly, chromosome: 1 blastn 28149 237 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;