RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA909412" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 5 ✖

bioproject 1

  • PRJNA909412 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5993915 5993915 PRJNA909412_P_NODE_16945_length_151_cov_1.973214_g16804_i0 PRJNA909412 16945 151 1.973214 2.97955314 Cloacibacillus evryensis 508460 Bacteria Bacteria 52.8 0.012   NTclustered gi|2831313556|gb|CP171104.1| 508460 g16804 i0 100 0.185430463576159 28 0 19 0 40 67 1685129 1685156 Cloacibacillus evryensis strain WGS1925 chromosome, complete genome blastn 28 52.8 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Cloacibacillus Cloacibacillus evryensis
8543539 8543539 PRJNA909412_P_NODE_10227_length_172_cov_3.060150_g10086_i0 PRJNA909412 10227 172 3.06015 5.263458 Thermus aquaticus 271 Bacteria Bacteria 148 1.7899999999999995e-31   NTclustered gi|939575972|gb|CP010822.1| 498848 g10086 i0 100 16.2558139534884 80 0 93 0 93 172 68930 68851 Thermus aquaticus Y51MC23, complete genome blastn 2796 148 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
12369768 12369768 PRJNA909412_P_NODE_15750_length_153_cov_2.166667_g15609_i0 PRJNA909412 15750 153 2.166667 3.31500051 Thermus aquaticus 271 Bacteria Bacteria 283 4.0799999999999995e-72   NTclustered gi|939575972|gb|CP010822.1| 498848 g15609 i0 100 142 153 0 100 0 1 153 47006 47158 Thermus aquaticus Y51MC23, complete genome blastn 21726 283 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
21292554 21292554 PRJNA909412_P_NODE_15157_length_154_cov_3.443478_g15016_i0 PRJNA909412 15157 154 3.443478 5.30295612 Thermus aquaticus 271 Bacteria Bacteria 148 1.57e-31   NTclustered gi|939575972|gb|CP010822.1| 498848 g15016 i0 97.674 1.0974025974026 86 2 100 0 69 154 2052050 2051965 Thermus aquaticus Y51MC23, complete genome blastn 169 148 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
23842868 23842868 PRJNA909412_P_NODE_10219_length_172_cov_3.067669_g10078_i0 PRJNA909412 10219 172 3.067669 5.2763906800000004 Thermus aquaticus 271 Bacteria Bacteria 150 4.97e-32   NTclustered gi|1352798305|gb|CP020572.1| 271 g10078 i0 100 1.8546511627907 81 0 94 0 92 172 11773 11853 Thermus aquaticus strain YT-1 plasmid p61, complete sequence blastn 319 150 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;