RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA909412" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA909412 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10177825 10177825 PRJNA909412_P_NODE_6408_length_207_cov_2.059524_g6267_i0 PRJNA909412 6408 207 2.059524 4.26321468 Cetobacterium 180162 Bacteria Bacteria 366 5.699999999999998e-97   NTclustered gi|2865368125|gb|CP122294.1| 188913 g6267 i0 98.551 484.367149758454 207 3 100 0 1 207 279817 279611 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 100264 366 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
11452937 11452937 PRJNA909412_P_NODE_4149_length_258_cov_2.114155_g4008_i0 PRJNA909412 4149 258 2.114155 5.4545199 Leptotrichia 32067 Bacteria Bacteria 259 1.29e-64   NTclustered gi|1708566027|dbj|AP019823.1| 157688 g4008 i0 96.774 130.957364341085 155 5 96 0 104 258 498003 497849 Leptotrichia hofstadii JCM16775 DNA, complete genome blastn 33787 259 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hofstadii
16193429 16193429 PRJNA909412_P_NODE_1273_length_494_cov_3.980220_g1134_i0 PRJNA909412 1273 494 3.98022 19.6622868 Cetobacterium somerae 188913 Bacteria Bacteria 872 0   NTclustered gi|2666488225|gb|CP143319.1| 188913 g1134 i0 98.583 512.135627530364 494 6 100 1 1 494 1318969 1318477 Cetobacterium somerae strain ceto chromosome, complete genome blastn 252995 872 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;